TriticeaemiRDB: The Triticeae miRNA Database
TriticeaemiRDB
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Species
Aegilops longissima
Aegilops tauschii
Hordeum spontaneum
Hordeum vulgare
Hordeum vulgare
var.
nudum
Triticum aestivum
Triticum aestivum
ssp.
yunnanense
Triticum dicoccum
Triticum durum
Triticum monococcum
Triticum spelta
Triticum urartu
Tools
Blast
RNAfold
Target Prediction
Differential Expression Analysis
GO Enrichment
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Differential Expression Analysis
Input Data
Gene Expression Matrix:
Tab-separated values: First column is GeneID, followed by expression values for each sample
Upload Expression Matrix
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Group Information:
Tab-separated values: First column is SampleID, second column is Group
Upload Group Information
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Comparison Between Groups:
Format: Group1|Group2 (use exact group names from Group Information)
Upload Comparison
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Analysis Parameters
Software:
DESeq2
edgeR
limma
P-value cutoff:
0.05
0.01
0.001
LogFC threshold:
1
1.5
2
Load Example
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Run Differential Expression Analysis