Document

BioProject	Submitter	Study/Bioproject Title	Publication	Instrument	Description
PRJNA656930	Qinghai university	Hordeum vulgare Raw sequence reads	Identification and Profiling of microRNAs and Their Target Genes in Tibetan Hulless Barley in Response to Barley Leaf Stripe (BLS) Infection	Illumina HiSeq 2500	Raw data of miRNAs in Tibetan Hulless Barley in Response to Barley Leaf Stripe (BLS) Infection.
PRJNA237744	University of Warwick	Hordeum vulgare strain:Qasr Ibrim strain Targeted Locus (Loci)	A complete ancient RNA genome: identification, reconstruction and evolutionary history of archaeological Barley Stripe Mosaic Virus	Illumina HiSeq 2500	sRNA coverage of several genomic loci in archaeological barley (Qasr Ibrim strain) and modern control samples.
PRJNA529516	Genebang	Hulless Barley SmallRNA Sequencing	Identification and Characterization of Downy Mildew-Responsive microRNAs in Indian Vitis vinifera by High-Throughput Sequencing	Illumina HiSeq 2500	Identification and characterization of nitrogen-responsive microRNAs in Tibetan hulless barley by high-throughput sequencing.
PRJNA507337	Zhejiang Univerisity	Small RNA and degradome sequencing of cultivated barley and Tibetan wild barley	Differential changes in grain ultrastructure, amylase, protein and amino acid profiles between Tibetan wild and cultivated barleys under drought and salinity alone and combined stress.	Illumina HiSeq 2500	Using small RNA sequencing and degradome analysis to identify microRNAs in response to salt stress in cultivated and Tibetan wild barley.
PRJNA823894	Henan Agricultural University	Small RNA sequencing of virus-infected barley plants	Barley GRIK1-SnRK1 kinases subvert a viral virulence protein to upregulate antiviral RNAi and inhibit infection	Illumina HiSeq 2500	To investigate the function of HvSDN1 in regulating the BYDV derivative vsiRNA accumulation, the barley plants with silencing HvSDN1 using BSMV-VIGS (BSMV-SDN1gs) and its control plants (BSMV-EV) were further employed to inoculate the BYDV-GAV, thus producing four groups of plants, i.e., BSMV-EV/BYDV- (without HvSDN1 silencing and free of BYDV), BSMV-SDN1gs/BYDV- (with HvSDN1 silenced and free of BYDV), BSMV-EV/BYDV+ (without HvSDN1 silencing and infected by BYDV), BSMV-SDN1gs/BYDV+ (with HvSDN1 silenced and infected by BYDV). The small RNAs were extracted from the four types of plants at 21 dpi of BYDV and were used to construct the small RNA-Seq library.
PRJNA823841	Henan Agricultural University	Small RNA sequencing of BYDV-infected barley plants	Barley GRIK1-SnRK1 kinases subvert a viral virulence protein to upregulate antiviral RNAi and inhibit infection	Illumina HiSeq 2500	To examine if the elevation of antiviral defense displayed in transgenic barley plants that overexpressing SnRK1-YFP might be associated with the increased abundance of BYDV vsiRNAs, small RNA sequencing assays were conducted to analyze the vsiRNA accumulation levels in BYDV-infected transgenic barley plants and WT controls. The small RNAs were separated from the total RNAs that extracted from the BYDV-infected barley plants at 4, 7 and 14 dpi, and then were employed for constructing the small RNA-Seq library.
PRJNA816439	Shiraz University	miRNA-barley	-	Illumina HiSeq 2500	miRNA from illumina platform, SAM at double ridge and triple mound stage, barley, cultivar Morex.
PRJNA809109	Imperial College London	small RNA from barley powdery mildew	Site-specific analysis reveals candidate cross-kingdom small RNAs, tRNA and rRNA fragments, and signs of fungal RNA phasing in the barley-powdery mildew interaction	NextSeq 550	The aim of this study is to determine the small RNA (sRNA) produced by barley and Blumeria graminis f. sp. hordei. Infected leaves were dissected to separate infection structures, and extracellular vesicles from the plant apoplast. The samples analysed were: epiphytic mycelium and spores; infected barley epidermis; haustoria; microsomes from infected epidermis; extracellular vesicles from infected or non-infected barley leaves.
PRJEB40118	CURTIN UNIVERSITY	Small RNA sequencing of a barley powdery mildew susceptible cultivar (cv) Baudin near-isogenic lines (NILs) introgressed with mlo-11 and mlo-11 (cnv2) mutations	Physiological Changes in Barley mlo-11 Powdery Mildew Resistance Conditioned by Tandem Repeat Copy Number	Illumina HiSeq 2500	Wild barley accessions have evolved broad-spectrum defence against barley powdery mildew through naturally occurring recessive mlo mutations. This research elucidates the pronounced repression of the Mlo promoter in mlo-11 compared to mlo-11 (cnv2) was governed by 24 nt heterochromatic small interfering RNAs.
PRJNA691038	Instytut Hodowli i Aklimatyzacji Roślin - PIB	Barley seeds miRNome stability during long-term storage and aging	Barley Seeds miRNome Stability during Long-Term Storage and Aging	Illumina MiSeq	Seed aging is a complex biological process attracting the scientists' attention for many years. High-throughput small RNA sequencing was applied to examine microRNAs contribution in barley seeds senescence. Unique samples of seeds that despite the same genetic makeup differed in viability after over 45 years of storage in a dry state were investigated. In total, 61 known and 81 novel miRNA were identified in dry seeds. The highest level of expression was found in four conserved miRNA families i.e. miR159, miR156, miR166 and miR168. However, the most astonishing result was the lack of significant differences in the level of almost all miRNAs in seed samples with significantly different viability. This result reveals that miRNAs in dry seeds are extremely stable. This is also the first identified RNA fraction that is not deteriorating along to the loss of seed viability. Moreover, the novel miRNA hvu-new41, with higher expression in seeds with the lowest viability was detected by RT-qPCR, has the potential to become an indicator of the decreasing viability of seeds during storage in a dry state. It might be responsible for the removal of (1-3.1-4)-beta-D-glucanase transcripts and lowering or completely blocking the synthesis of this key enzyme for seed germination. Overall design: Examiantiopn of 3 barley seeds stocks: Rc - after seed regeneration i.e. non-stored control; Lv - seeds after storage 1972-2018 (germination 2%); Hv - seeds after storage 1972-2018 (germination 86,7%).
PRJNA682179	zhejiang university	Identification of microRNAs in response to low potassium stress in the shoots of Tibetan wild barley and cultivated barley [miRNA-seq]	BIdentification of microRNAs in response to low potassium stress in the shoots of Tibetan wild barley and cultivated	Illumina HiSeq 2500	Soil potassium deficiency has become a global problem in agricultural production, seriously restricting crops productions and agricultural sustainable development. Identification of the microRNAs and understanding their functions in response to low K stress will be helpful for developing crop varieties with low K tolerance. Our previous study identified a low K tolerant accession XZ153 from Tibetan wild barley. In this study, small RNA and degradome analysis were performed on two barley genotypes differing in low K tolerance (XZ153, tolerant; ZD9, sensitive) to identify the miRNAs and their targets responding to low K stress. A total of 1108 miRNAs were detected in shoots of XZ153, and ZD9 at 2 d and 7 d after low K stress, and their targets were identified through bioinformatics prediction and degradome analysis. We identified 65 differentially expressed miRNAs responding to low K stress. The results also showed that miR164c, miR169h and miR395a modules could mediate TCA cycle, glycolysis pathway and pentose phosphate pathway responding to low K stress. The osa-miR166g-3p and ghr-miR482b may act as the regulators in Ca2+ signaling pathway in response to low K stress. The methionine salvage cycle involved in ethylene biosynthesis process mediated by miR396c-3p and osa-miR171e-5p might be also involved in responding to low K stress. Some miRNAs, including miR160a, miR396c and miR169h modules, which participated in photosynthesis regulation under low K stress, differed between the two barley genotypes. In conclusion, these exclusively expressed miRNAs and their targets play the crucial roles in low K tolerance. Overall design: A total of 24 shoot samples (two genotypes x two potassium conditions x two time periods x three replications) were harvested for further RNA isolation and library construction.
PRJNA636099	Donald Danforth Plant Science Center	sRNA and RNA sequencing profile of barley and wheat anther	Premeiotic, 24-Nucleotide Reproductive PhasiRNAs Are Abundant in Anthers of Wheat and Barley But Not Rice and Maize	NextSeq 550	Two classes of pre-meiotic (21-nt) and meiotic (24-nt) phasiRNAs and their patterns of accumulation, have been described in maize and rice anthers. Their precise function remains unclear but some studies have shown that they support male fertility. Their important role in anthers underpins our current study to characterize phasiRNAs in wheat and barley anthers. We staged anthers at every 0.2 mm of development for one wheat and two barley varieties. We identified pre-meiotic (0.2 mm, 0.4 mm and 0.6 mm), meiotic (0.8 mm, 1.0 mm and 1.4 mm) and post-meiotic (1.8 mm) anthers for which we then investigated accumulation patterns of RNAs, including reproductive phasiRNAs.
PRJNA634514	Laval university	Small RNA (sRNA) and parallel analysis of RNA ends (PARE) analysis during the early stage of gametic embryogenesis in barley	The commitment of barley microspores into embryogenesis correlates with miRNA-directed regulation of members of the SPL, GRF and HD-ZIPIII transcription factor families	Illumina HiSeq 2500	Small RNA (sRNA) and parallel analysis of RNA ends (PARE) sequencing data. The scope of this data consists to study the regulatory activity of micro RNA (miRNA) during the early stages of microspore development in gametic embryogenesis in barley using the embryogenic-responsive cultivar Gobernadora.
PRJNA608272	Departemnt of Gene Expression, Adam Mickiewicz University in Poznan	NGS analysis of small RNAs under nitrogen excess stress in shoot and root of 2 week old barley plants	Expression Analysis of Nitrogen Metabolism-Related Genes Reveals Differences in Adaptation to Low-Nitrogen Stress between Two Different Barley Cultivars at Seedling Stage	Illumina HiSeq 4000	In order to identify microRNAs involved in response to nitrogen excess stress we performed deep sequencing of sRNA libraries constructed form RNA isolated from roots and shoots of two week old barley plants that have been grown under nitrogen excess stress and control conditions. Overall design: barley plants grown under conditions and nitrogen excess stress small RNA sequencing.
PRJNA607205	Adam Mickiewicz University, Poznan	Deep-sequencing of small RNAs from barley shoot and root growing in low-Pi and control condition	Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses	Illumina HiSeq 4000	RNA was isolated from 23 old barley plants (shoots and roots), line Rolap. We used a modified method that allows for enrichment of small RNAs. Libraries were prepared using TruSeq Small RNA Library Preparation Kit (Illumina), followed by sequencing of NGS libraries. Overall design: Total RNA isolation, libraries preparation, single-reads (50 cycles) sequencing, Illumina technology, HiSeq 4000, sequencing performed at Fasteris SA (Switzerland).
PRJNA607200	Adam Mickiewicz University, Poznan	Deep-sequencing of degraded or cleaved RNAs from barley shoot and root growing in low-Pi condition	Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses	Illumina HiSeq 2500	RNA was isolated from 23 old barley plants (shoots and roots), line Rolap. PARE libraries were constructed for both barley organs, followed by sequencing of NGS libraries. Overall design: Total RNA isolation, PARE libraries preparation, single-reads (50 cycles) sequencing, Illumina technology, HiSeq 2500, sequencing performed at Fasteris SA (Switzerland).
PRJNA476756	CICG, USDA/ARS	Small RNA sequencing of Barley CI 16151 and fast-neutron-derived, immune-compromised mutants infected with the powdery mildew fungus (Blumeria graminis f. sp. hordei (Bgh); isolate 5874)	Biological Roles of Small Rnas Expressed During Infection of Barley by the Obligate Fungal Biotroph, Blumeria graminis f. sp. hordei	Illumina HiSeq 2500	The powdery mildew fungus, Blumeria graminis, is an obligate biotrophic pathogen of cereals and has significant impact on food security (Dean et al., 2012. Molecular Plant Pathology 13 (4): 414-430. DOI: 10.1111/j.1364-3703.2011.00783.x). Blumeria graminis f. sp. hordei (Bgh) is the causal agent of powdery mildew on barley (Hordeum vulgare L.). We sought to identify small RNAs (sRNAs) from both barley and Bgh that regulate gene expression both within species and cross-kingdom. Overall design: 90 samples analyzed = 5 genotypes * 6 time points * 3 replications Note: This experiment used the identical split-plot design, tissue, and source RNA as GEO submission # 101304 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE101304).
PRJNA526135	Adam Mickiewicz University Poznan	miRNA expression during development and drought stress in barley	A Functional Network of Novel Barley MicroRNAs and Their Targets in Response to Drought	Illumina HiScanSQ	Combating loss of production due to drought stress is especially important for barley cultivation. With increasing number of data confirming the importance of miRNA-mediated regulation, we have searched for novel barley miRNAs related to drought stress. We performed deep sequencing of small RNAs isolated from developmental stages of barley plants as well as drought stressed plants coupled with degradome analysis.
PRJNA485436	College of Agriculture &Biotechnology, Zhejiang Un	A wild barley accession WB-1 and a barley cultivar Golden Promise Raw sequence reads	Identification of microRNAs Responding to Aluminium, Cadmium and Salt Stresses in Barley Roots	Illumina HiSeq 2500	16 small RNA libraries of shoot and root tissues from a wild barley accession (WB-1) and a cultivar Golden Promise with contrasting Cd tolerance were constructed and sequenced. Moreover, a degradome library was also conducted to identify the target genes of miRNAs.
PRJNA481620	Zhejiang University	Hordeum vulgare Genome sequencing	Identification of microRNAs in response to aluminum stress in the roots of Tibetan wild barley and cultivated barley	Illumina HiSeq 2500	Up to date, there is no report about sequencing and identification of miRNA responsive to Al stress in barley. Thus, this study could provide useful information for revealing molecular mechanism of miRNAs in regulating Al tolerance in barley.
PRJDB6438	NICS_NARO	Cloning and Functional Analysis Agronomically Important Genes on Barley	miR172 downregulates the translation of cleistogamy 1 in barley	Illumina Genome Analyzer IIx	Cultivars of barley (Hordeum vulgare L.) showing a cleistogamous floret phenotype hold an ability to prevent the plants from infection of various invasive fungi, notably certain Fusarium ssp., and also greatly reduce the risk of gene flow through pollen dispersal. A single recessive gene cleistogamy 1 (cly1) encoding an APETLA2 (AP2) type protein determines the cleistogamy in barley. Within the cly1 gene, sequence variations at the miR172 target site are associated with the lodicule development and then the cleistogamous phenotype. An miRNA library from immature spikes of barley variety Morex is constructed and sequenced to characterize the interaction of miRNA with cly1 gene sequences and indetify the barley miR172 genes through sequence alignment against the Morex whole genome sequence for understanding of the regulation mechanisms on cly1 gene activity as well as its gene product, AP2 protein.
PRJNA389146	Zhejiang University	Sequencing of barley embryonic microRNAs	microRNAs participate in gene expression regulation and phytohormone cross-talk in barley embryo during seed development and germination	Illumina HiSeq 2000	Sequencing of barley embryonic microRNAs at three different stages: Seed-1DAG, Seed-5DAG and Embryo-10DPA.
PRJNA354889	Northwest A&F University	Hordeum vulgare subsp. vulgare Transcriptome or Gene expression	Transcriptional Dynamics of Grain Development in Barley (Hordeum vulgare L.)	Illumina HiSeq 2000	Barley is a well-studied model of cereal grain development and maturation. To better understand the molecular basis for barley grain development, we performed a comparative study of transcriptome and small RNAs dynamics between four developmental phases of this process: early pre-storage phase (0-5 DAP), late pre-storage or transition phase (6-10 DAP), early storage phase (11-15 DAP) and levels off stages (16-20 DAP).
PRJNA294348	Northwest A&F University	Hordeum vulgare subsp. vulgare Transcriptome or Gene expression	Genome-Wide Identification and Characterization of Salinity Stress-Responsive miRNAs in Wild Emmer Wheat (Triticum turgidum ssp. dicoccoides)	Illumina HiSeq 2000	sRNA sequencing of barley under salt stress
PRJNA960906	University of Washington	Small RNA sequencing of wheat infected with stem rust	Dual host-pathogen small RNA sequencing during wheat stem rust infection	Ion Torrent Proton	This experiment isolated small RNA from Triticum aestivum seedlings infected with Puccinia graminis f.sp. tritici, in order to study gene regulation during a biotrophic interaction. Three infected replicates and three mock-inoculated replicates. Libraries were sequenced on the Ion Torrent platform.
PRJNA929049	Kastamonu University	miRNA sequencing of three Turkish wheat species	Diverse expression pattern of wheat transcription factors against abiotic stresses in wheat species	Illumina HiSeq 2000	This is a comparison study about miRNA libraries of three Turkish wheat cultivars in different ploidy levels (Triticum aestivum cv. Yuregir-89, Triticum aestivum cv. Kiziltan-91 and Triticum monococcum). In this project, it was aimed to reveal the miRNAs that play a role in drought stress tolerance by investigating the differences in miRNA expression profiles under drought stress among one drought tolerant (Kiziltan-91), another moderately drought tolerant (Yuregir-89) and ancestral wheat species. For this purpose, total RNA isolation was performed by collecting root and leaf samples from control and stressed plants and sRNA-Seq was performed using next generation sequencing (NGS) technology.
PRJNA916207	National Agri food biotechnology institute	System analysis of differentially expressed miRNAs in hexaploid wheat display tissue-specific regulatory role during Fe deficiency response	System analysis of differentially expressed miRNAs in hexaploid wheat display tissue-specific regulatory role during Fe deficiency response	Illumina NovaSeq 6000	Iron (Fe) deficiency in soil could largely affect crop productivity but the molecular mechanisms underlying the regulation of Fe deficiency response are still limited. Specifically, microRNA (miRNA) mediated regulation of Fe deficiency genes and the network is poorly understood. In the current work, we aim to understand the molecular mechanisms of Fe deficiency response in wheat seedlings by generating an inventory of differentially expressed miRNAs. Stem loop quantitative RT PCR analysis suggested the expression of these miRNAs in a spatio-temporal fashion, with few showing time-specific expression responses. Furthermore, miRNA target prediction analysis suggested that few of these miRNA could specifically target genes such as multicopper oxidases, E3 ubiquitin ligases, GRAS family and WRKY transcription factors known to be involved in Fe homeostasis. Our work provides insights into miRNA-mediated regulatory pathways during Fe deficiency response. The first information generated here will help to identify the candidate genes for genetic improvement of Fe deficiency tolerance in hexaploid wheat.
PRJNA895954	Anhui Agricultural University	Whole transcriptome resequencing for temperature-mediated seed dormancy regulation in wheat	Identification and validation of coding and non-coding RNAs involved in high-temperature-mediated seed dormancy in common wheat	Illumina HiSeq 4000	Identification of mRNAs lncRNAs and miRNAs involved in temperature-mediated seed dormancy regulation in wheat
PRJNA877088	Korea university	Wheat spikelet total mRNA sequencing	Heat-induced RING/U-BOX E3 ligase, TaUHS, is a negative regulator by facilitating TaLSD degradation during the grain filling period in wheat	HiSeq X Ten	Analysis total RNA expression under heat stress during grain-filling stage
PRJNA867659	Chinese Academy of Agricultural Sciences	Analysis of small RNA in wheat ovary stages infected by Tilletia laevis Kuhn	Characteristics of the Infection of Tilletia laevis Kühn (syn. Tilletia foetida (Wallr.) Liro.) in Compatible Wheat	Illumina HiSeq 2500	We used a high-throughput sequencing approach to determine miRNAs in three different developmental stages of T.laevis-infected wheat ovaries.
PRJDB11752	CU_KERALA	sRNA transcriptome of wheat in response to stem rust and leaf rust interaction	Stem and leaf rust-induced miRNAome in bread wheat near-isogenic lines and their comparative analysis	Illumina HiSeq 2500	The R-gene mediated resistance has been employed as an efficient approach to control the rust diseases in wheat, one of the dreadful biotrophic fungal diseases affecting crop yield. The R-genes Sr36 and Lr45 have proven their ability in controlling highly virulent strains of stem rust and leaf rust diseases respectively. However, these R-gene mediated modulation over the regulatory non-coding RNAs was unclear. We demonstrated the alteration in non-coding RNA profiles during the resistant and susceptible interaction of wheat with stem rust and leaf rust using Sr36 and Lr45 carrying lines as resistant lines. Puccinia graminis pathotype 40A and Puccinia triticina pathotype 77-5 were used for the infection treatment whereas, water was used for the mock treatment. The non-coding RNA profiles obtained in this study will be a resource to the expanding rust disease management program.
PRJNA289147	Scot Hulbert,Washington State University	Triticum aestivum infected with Puccinia striiformis : small RNA and PARE (degradome) sequencing	Analysis of miRNAs in Two Wheat Cultivars Infected With Puccinia striiformis f. sp. tritici	Ion Torrent Proton,Illumina HiSeq 2500	The fungus Puccinia striiformis causes stripe rust disease in cereal crops. This project contains raw sequence reads from small RNA sequencing and Parallel Analysis of RNA Ends (PARE, i.e. degradome-seq). Both infected and uninfected wheat are featured.
PRJNA837867	Shanxi Agricultural University	Triticum aestivum Raw sequence reads	Identification of long non-coding RNA-microRNA-mRNA regulatory modules and their potential roles in drought stress response in wheat (Triticum aestivum L.)	Illumina NovaSeq 6000	Drought induced miRNAome of two wheat (Triticum aestivum L.) varieties.
PRJNA799639	Northwest A&F University	Object to identify drought memory-related miRNA in wheat	Integrate Small RNA and Degradome Sequencing to Reveal Drought Memory Response in Wheat (Triticum aestivum L.)	Illumina HiSeq 2500	This study identified drought memory response miRNAs and their target genes in wheat by small RNA.Trileaf stage wheat seedlings were divided into three groups: control group (CG), direct drought (DD) and drought memory (DM) groups.
PRJNA791687	Biology Centre ASCR, v.v.i.	Transcriptome of Triticum aestivum genotypes associated with resistance against the Wheat dwarf virus	Transcriptome Dynamics in Triticum aestivum Genotypes Associated with Resistance against the Wheat Dwarf Virus	NextSeq 500	Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goals of this study are to compare NGS-derived Triticum aestivum transcriptome (RNA-seq) profiling methods and to evaluate genotypes associated with resistance against the Wheat dwarf virus. Methods: Triticum aestivum mRNA profiles of genotypes associated with resistance against the Wheat dwarf virus were generated by deep sequencing, in four replicates, using Illumina. The sequence reads that passed quality filters were analyzed at the transcript isoform level with two methods: Burrows-Wheeler Aligner (BWA) followed by ANOVA (ANOVA) and TopHat followed by Cufflinks. qRT-PCR validation was performed using TaqMan and SYBR Green assays. Conclusions: Our study represents the first detailed analysis of Triticum aestivum transcriptomes, with biologic replicates, generated by RNA-seq technology. The optimized data analysis workflows reported here should provide a framework for comparative investigations of expression profiles. Our results show that NGS offers a comprehensive and more accurate quantitative and qualitative evaluation of mRNA and miRNA content within a cell or tissue. We conclude that RNA-seq based transcriptome characterization would expedite genetic network analyses and permit the dissection of complex biologic functions. Overall design: Triticum aestivum mRNA profiles of genotypes associated with resistance against the Wheat dwarf virus were generated.
PRJNA698286	School of Resources and Environment	Triticum aestivum Raw sequence reads	Comparative Small RNA Profiling and Functional Exploration on Wheat With High- and Low-Cadmium Accumulation	HiSeq X Ten	To find out the miRNAs related to the absorption of heavy metal cadmium in wheat.
PRJNA683746	Yangzhou University	sRNA-seq and RNA-seq of wheat inoculating Fusarium graminearum	Identification of Wheat LACCASEs in Response to Fusarium graminearum as Potential Deoxynivalenol Trappers	BGISEQ-500	Elucidate the mechanism of wheat-Fusarium graminearum interaction.
PRJNA656372	Life sciences college, Henan Normal University	Temporal expression study of microRNAs in crown tissues of winter wheat grown under natural growth condition	Temporal expression study of miRNAs in the crown tissues of winter wheat grown under natural growth conditions	BGISEQ-500	MicroRNAs (miRNAs) are single strand small non-coding RNAs that regulate target mRNAs at post-transcription level. Winter wheat (Triticum aestivum L.), is an important crop plant all over the world. Long term cold exposure (vernalization) is necessary for winter wheat transition from vegetative growth to reproductive growth, yet the involvement of miRNAs in these stages remains unknown. Therefore, we performed next generation sequencing of small RNAs profiles in crown tissues at three-leaf stage, winter dormancy stage, spring greenup stage and jointing stage. Overall design: To identify miRNAs involved in winter wheat growth and development in te field, winter wheat cultivar Shimai 22 was grown in the field under natural weather condition. Crown tissues were collected at 4 different growth and development stages: three leaf stage, winter dormancy stage, spring greenup stage and jointing stage, small RNA libraries were constructed, and BGISEQ500 RS (BGI, China) sequencing platform was used for small RNA libraries sequencing.
PRJNA642367	Agricultural Genomics Institute at Shenzhen, China	The impacts of m6A methylation on mRNA translation of wheat	Transcriptome-wide analyses of RNA m6A methylation in hexaploid wheat reveal its roles in mRNA translation regulation	Illumina HiSeq 2500	To investigate the roles of m6A methylation in the regulation of mRNA translation of wheat genes. We conducted transcriptome profiling of m6A and small RNA, and measured the translation levels of mRNAs in wheat spikes. The translation efficienies were compared between mRNAs with or wihtout m6A.
PRJNA578261	Northwest A&F University	Wheat anther miRNA sequencing	TaEXPB5 functions as a gene related to pollen development in thermo-sensitive male-sterility wheat with Aegilops kotschyi cytoplasm	HiSeq X Ten	To reveal the mechanism of thermosensitive male sterility in wheat.
PRJNA563099	Henan Agriculture University	miRNA in wheat response to different N level	Identification of microRNAs in developing wheat grain that are potentially involved in regulating grain characteristics and the response to nitrogen levels	Illumina HiSeq 2000	Study the key miRNA related to nitrogen stress during wheat develoment.
PRJNA553193	University of Zurich	Small RNA-seq from hexaploid bread wheat (Triticum aestivum) infected with wheat powdery mildew	Domestication of High-Copy Transposons Underlays the Wheat Small RNA Response to an Obligate Pathogen	Illumina HiSeq 2500	Sequencing data from wheat leaf material infected with three different powdery mildew (B.g. tritici ) isolates and from uninfected leaves. The goal of the project is to investigate the wheat small RNA response to wheat powdery mildew infection.
PRJNA554945	Henan Agricultural University	Triticum aestivum Raw sequence reads	Enhanced Senescence Process is the Major Factor Stopping Spike Differentiation of Wheat Mutant ptsd1	Illumina HiSeq 2500	Transcriptomes and miRNomes of the wide type (WT) and mutant ptsd1 at the early spike differentiation stage.
PRJNA551738	Henan Agricultural University	The miRNA-seq of three tissues for Guomai 301 (Triticum aestivum)	Gene Expression Profiles and microRNA Regulation Networks in Tiller Primordia, Stem Tips, and Young Spikes of Wheat Guomai 301	Illumina HiSeq X Ten	To find gene expression profiles of tiller primordia, stem tips and young spikes for Guomai 301 (Triticum aestivum), we carried out the miRNA-seq.
PRJNA516200	Henan Normal University	Identification and Temporal Expression Analysis of Conserved and Novel MicroRNAs in the Leaves of Winter Wheat Grown in the Field	Identification and Temporal Expression Analysis of Conserved and Novel MicroRNAs in the Leaves of Winter Wheat Grown in the Field	BGISEQ-500	MicroRNAs (miRNAs) are small non-coding RNAs that regulate target mRNAs by inducing degradation or preventing translation of their target mRNAs. Winter wheat, Triticum aestivum., is an important crop plant, yet there are only a few studies on the association of miRNAs and growth and development of winter wheat grown in the field. Here we carried out experimental analysis of miRNAs in wheat leaves by analyzing small RNA profiles at different growth stages. Overall design: To identify miRNAs involved in winter wheat growth and development, we performed high-throughput sequencing of sRNA libraries from leaves at 4 different growth and development stages: three leaf stage, winter dormancy stage, spring greenup stage and jointing stage.Winter wheat cultivar Shimai 22 was grown in the field under natural weather condition;BGISEQ500 RS (BGI, China)platform was used.
PRJEB28454	ROTHAMSTED RESEARCH	Analysis of small RNA silencing in Zymoseptoria tritici - wheat interactions	Analysis of small RNA silencing in Zymoseptoria tritici - wheat interactions	Illumina HiSeq 2000	Deep sequencing of small RNA preparations from Zymoseptoria tritici isolate IPO323 cultured in vitro (in Czapek-Dox Broth, CDB) and those from the infected wheat cv. Bobwhite leaf tissues sampled at the four different time points corresponding to the four critical phases of Septoria tritici blotch disease development, namely 4 dpi (asymptomatic phase), 9 dpi (transition to necrotrophic stage), 13 dpi (necrotrophic phase), and 21 dpi (profuse asexual sporulation) was carried out on an Illumina HiSeq 2000 using 50 cycle single end reads. Deep sequencing of small RNA preparations from mock-inoculated wheat cv. Bobwhite leaves sampled at 4 dpi, 9 dpi, 13 dpi, and 21 dpi and from healthy, untreated 17 days old wheat cv. Bobwhite leaves was also carried out using the same sequencing technology.
PRJNA523507	Hebei Agricultural University	microRNA to patassium deprivation of wheat	Global identification and characterization of miRNA family members responsive to potassium deprivation in wheat (Triticum aestivum L.)	Illumina HiSeq 2500	To provide insights into micorRNA to patassium deprivation in the seeding stage of wheat.
PRJNA514418	Nanjing Agriculture University	Mutation of a histidine-rich calcium-binding protein gene in wheat confers resistance to Fusarium head blight	Mutation of a histidine-rich calcium-binding-protein gene in wheat confers resistance to Fusarium head blight	Illumina HiSeq 2500	We isolated the major-effect wheat QTL, Qfhs.njau-3B, that confers head blight resistance and showed that it is the same as the previously designated Fhb1. Fhb1 results from a rare deletion involving the 3' exon of the histidine-rich calcium-binding protein gene on chromosome 3BS. Both wheat and Arabidopsis transformed with the Fhb1 sequence showed enhanced resistance to F. graminearum infection. The translation products of this gene's homologs among plants are well conserved and might be essential to plant growth and development. Fhb1 could be useful not only for curbing FHB diseases in grain crops but also for improving other plants vulnerable to Fusarium spp.
PRJNA511811	Northwest Agriculture & Forestry University	sRNA sequencing of wheat infected with BYDV-GAV	Barley yellow dwarf virus-GAV-derived vsiRNAs are involved in the production of wheat leaf yellowing symptoms by targeting chlorophyll synthase	BGISEQ-500	Obtaining total sRNA data from wheat leaves infected with BYDV-GAV.
PRJNA480952	ETH Zurich	Small RNA sequncing of Wheat infected by Zymoseptoria tritici during the infection cycle	Small RNA Bidirectional Crosstalk During the Interaction Between Wheat and Zymoseptoria tritici	NextSeq 500	We studied the bidirectional cross-kingdom RNAi in wheat-Z. tritici pathosystem. The whole dataset contains sRNA-seq, degradome sequencing and mRNA-seq. The sRNA-seq samples include wheat infected by Z. tritici at 7dpi, 12dpi and 14dpi, wheat without infections (Mocks) at 7dpi, 12dpi and 14dpi, and Z. tritici grow in vitro. All of the sRNA-seq samples have three replicates. The degradome sequencing data include mocks (7dpi and 12dpi), wheat infected by Z. tritici (7dpi and 12dpi) and Z. tritici grow in vitro. Additionally, there are as well mRNA-seq of mocks at 7dpi and 12dpi, which have three replicates.
PRJEB24307	CREA	Transcriptomic analysis of Fusarium graminearum disease response in near-isogenic hexaploid wheat lines differeing for the presence of a resistance QTL on chromosome 2DL	Comparative Transcriptome Profiles of Near-Isogenic Hexaploid Wheat Lines Differing for Effective Alleles at the 2DL FHB Resistance QTL	Illumina Genome Analyzer IIx	To mine the molecular response associated with the wheat 2DL FHB resistance QTL and to identify candidate genes implicated in such esistance, a comprehensive transcriptomic analysis of the early response to F. graminearum infection in spikelet and rachis was performermed with the RNA-Seq and miRNA-Seq techniques. The analyses were conducted on two near isogenic lines differing for the presence of the 2DL QTL. The response to fungal infection in terms of mRNAs accumulation trend was similar in both NILs, even if at higher intensity in the susceptible NIL, and involved inhibition of primary metabolism and activation of secondary metabolism, amino acid metabolism, cell all reinforcement and remodelling, scavenging of ROS, hormone metabolism and signalling, detoxification and induction of several genes encoding transcription factors and proteins implicated in pathogens resistance response. To search for candidate genes with expression profiles associated with the 2DL QTL resistance led to the discovery of two different strategies associated with sugar signalling in the two NILs. Two genes associated with FHB suscaptibility were discovered. Altered expression was also observed for fungal non-coding RNAs which putative targets were represented by the WIR1A gene, involved in resistance response, and a gene encoding for a jacalin-related lectin protein, which partecipate in biotic and abiotic stress response. The data support the presence of a cross-talk between the plant and the fungus.
PRJNA420197	Shandong University	sRNA sequencing of wheat introgression lines treated by saline or alkaline stress	Small RNA and degradome sequencing used to elucidate the basis of tolerance to salinity and alkalinity in wheat	Illumina HiSeq 2000	To identify sRNA relative to saline/alkaline stress in wheat.
PRJNA353130	China Agricultural University	Global studies of miR021b function in wheat	Wheat miR9678 Affects Seed Germination by Generating Phased siRNAs and Modulating Abscisic Acid/Gibberellin Signaling	Illumina HiSeq 2500	Seed germination is not only a critical developmental step in the wheat life cycle, but is also important for agricultural production including yield and quality. However, in wheat, the knowledge of the mechanism of regulating seed germination is still limited. In this study, we found 22nt microRNA (miR) miR021b, specifically expressed in scutellum of developing and germinating wheat seed, generated phased ta-siRNAs by cleaving a long non coding RNA LNCR. Overexpression of miR021b in wheat showed a retarded germination and improved resistance to pre-harvest sprouting (PHS), while its silencing enhanced germination rate through transiently expressing in immature embryos. To figure out the mechanism of miR021b regulating seed germination, we found miR021b affected the expression of genes involved in bioactive gibberellin (GA) synthesis and its overexpression reduced the bioactive GA content and inhibited amylase genes expression. In addition, it was observed that TaVp1, TaABF and TaABI3, responded the abscisic acid (ABA) signaling, can bind the promoter of miR021b precursor and regulated its expression, suggesting that miR021b might function in GA-ABA balance during germination. This study identified a signaling pathway that miR021b controlled GA-dependent seed germination in wheat through generating phased ta-siRNAs by cleaved a long non coding RNA LNCR.
PRJNA392981	Capital Normal University	Triticum aestivum Raw sequence reads	Genome-Wide Identification and Characterization of Long Non-Coding RNA in Wheat Roots in Response to Ca2+ Channel Blocker	Illumina HiSeq 2500	Search different expression mRNA in wheat root induced by Ca2+-channel blocking.
PRJNA383333	Chinese Academy of Agricultral Sciences	Micro-RNA sequencing of four different stages of spike in wheat	Transcriptome Profiling of Wheat Inflorescence Development from Spikelet Initiation to Floral Patterning Identified Stage-Specific Regulatory Genes	Illumina HiSeq 2000	Micro-RNA sequencing of four different stages (DR,FM,AM,TS) of spike in wheat.
PRJNA380529	Harbin Normal University	Triticum aestivum Transcriptome or Gene expression	Uncovering key small RNAs associated with gametocidal action in wheat	Illumina Genome Analyzer	Two small RNA libraries were constructed from T. aestivum cv. Chinese Spring (CS) and Chinese Spring-gametocidal 3C chromosome monosomic addition line (CS-3C) and sequenced using Illumina high throughput sequencing technology to investigate whether small RNAs play a role in the gametocidal phenomenon.
PRJNA374855	Instituto de Biotecnologia, INTA	sRNAs from Triticum aestivum and Delphacodes kuscheli Raw sequence reads	Mal de Río Cuarto Virus Infection Triggers the Production of Distinctive Viral-Derived siRNA Profiles in Wheat and Its Planthopper Vector	Illumina HiSeq 1500	Comparative analysis of sRNAs in MRCV (Mal de Río Cuarto virus) infected plants (wheat) and insects (D. kuscheli).
PRJNA353049	Institute of Genetics and Developmental Biology, C	Transcriptome and Epigenome analysis in Polyploidy Wheat and its progenitors	New insights on the evolution of nucleolar dominance in newly resynthesized hexaploid wheat Triticum zhukovskyi	Illumina HiSeq 2000	We analyzed sequence features of intergenic spacer (IGS) in the progenitors of common wheat Triticum aestivum (AABBDD), which revealed nucleolar organizing region (NOR) dominance hierarchy (BB > DD > AA). The hierarchy is based on the length, transcript start site, number and sequence variation of Rep1 (promoter-like repeat) unit. Transcriptome and epigenome in the synthetic tetraploid wheat (AADD / DDAA) and their progenitors T. urartu (AA) and Ae. tauschii (DD) were further investigated to explore the mechanism for NOR silencing. We found that long non-coding RNAs and 24-nt small interfering RNAs were highly abundant in the IGS regions of the DD, and scarcity in AA. After polyploidy formation, NORs of AA subgenome were silenced and associated with increased levels of 24-nt siRNAs derived from active NOR of the DD subgenome. These DD-subgenome 24-nt siRNAs may trans-act on AA-genome IGS to induce DNA methylation via RNA directed DNA methylation (RdDM). Furthermore, BS-Seq and MeDIP-Seq assay show siRNA-targeted regions in AA-subgenome IGS were hypermethylated. Additionally, the increased H3K27me3 and decreased H4K12ac were found in AA-subgenome IGS after polyploidization. This similar phenomenon of BB 24-nt siRNAs trans-act on DD was detected in hexaploid wheat.
PRJNA347868	Tianjin Institute of Agricultural Quality Standard	Triticum aestivum Raw sequence reads	GmDREB1 overexpression affects the expression of microRNAs in GM wheat seeds	Illumina HiSeq 2500	In this study, we performed deep sequencing of sRNAs from a transgenic wheat line overexpressing GmDREB1 and non-transgenic wheat varieties.
PRJNA341486	National Research Council of Canada	small RNA and RNA profiling in Triticum turgidum and Triticum aestivum	-	Illumina HiSeq 2500	Identification of key genes for wax production.
PRJNA326902	Agriculture and Agri-Food Canada	Deep sequencing of wheat sRNA transcriptome reveals distinct temporal expression pattern of miRNAs in response to heat, light and UV	Deep sequencing of wheat sRNA transcriptome reveals distinct temporal expression pattern of miRNAs in response to heat, light and UV	Illumina HiSeq 2000	Understanding of plant adaptation to abiotic stresses has implications in plant breeding, especially in the context of climate change. MicroRNAs (miRNAs) and short interfering RNAs play a crucial role in gene regulation. Here, wheat plants were exposed to one of the following stresses: continuous light, heat or ultraviolet radiations over five consecutive days and, leaf tissues from three biological replicates were harvested at 0, 1, 2, 3, 7 and 10 days after treatment (DAT). A total of 72 small RNA libraries were sequenced on the Illumina platform generating ~524 million reads corresponding to ~129 million distinct tags from which 232 conserved miRNAs were identified. The expression levels of 1, 2 and 79 miRNAs were affected by ultraviolet radiations, continuous light and heat, respectively. Approximately 55% of the differentially expressed miRNAs were downregulated at 0 and 1 DAT including miR398, miR528 and miR156 that control mRNAs involved in activation of signal transduction pathways and flowering. Other putative targets included histone variants and methyltransferases. These results suggest a temporal miRNA-guided post-transcriptional regulation that enables wheat to respond to abiotic stresses, particularly heat. Designing novel wheat breeding strategies such as regulatory gene-based marker assisted selection depends on accurate identification of stress induced miRNAs. Overall design: Wheat plants were exposed to one of the following stresses: continuous light, heat or ultraviolet radiations over five consecutive days and, leaf tissues from three biological replicates were harvested at 0, 1, 2, 3, 7 and 10 days after treatment (DAT). A total of 72 small RNA libraries were sequenced on the Illumina platform.
PRJNA309881	Henan Agricultural University	Triticum aestivum Transcriptome or Gene expression	Identification and Comparative Analysis of microRNA in Wheat (Triticum aestivum L.) Callus Derived from Mature and Immature Embryos during In vitro Culture	Illumina HiSeq 2000	wheat callus miRNA.
PRJNA309061	Agricultural Biotechnology Center	Triticum aestivum Raw sequence reads	Comparison of small RNA next-generation sequencing with and without isolation of small RNA fraction	Illumina HiScanSQ	The aim of the present study was to compare data obtained by sequencing small libraries prepared from isolated small RNA fraction and from total RNA.
PRJNA284172	NRCPB	Triticum aestivum cultivar:HD-2967 Transcriptome or Gene expression	Molecular Characterization of GS2 and Fd-GOGAT Homeologues and Their Biased Response to Nitrogen Stress in Bread Wheat (Triticum aestivum L.)	Illumina HiSeq 2000	microRNAs from root and shoot tissues of wheat. Submitted by: Subodh K. Sinha and P. K. Mandal.
PRJNA275100	Institute of Crop Science	Expression profiling of small RNAs in developing wheat grains	Small RNA and Degradome Sequencing Reveal Complex Roles of miRNAs and Their Targets in Developing Wheat Grains	Illumina HiSeq 2000	We aimed to identify differentially expressed miRNAs during wheat grain development by using high-throughput sequencing approach. Four small RNA libraries were constructed from wheat grains collected at 7, 14, 21 and 28 days post anthesis (DPA). A total of 165 known miRNAs and 37 novel miRNAs were identified in four small RNA libraries. Moreover, a miRNA-like long hairpin locus was first identified to produce 21~22-nt phased siRNAs. A comparison of the miRNAomes revealed that 55 miRNA families were differentially expressed during the grain development. Overall design: Examination of 4 different small RNA expression profilings in the 4 developmental stages of wheat grains.
PRJNA270216	Henan agricultural university	Triticum aestivum Transcriptome or Gene expression	Identification and comparative analysis of differentially expressed miRNAs in leaves of two wheat (Triticum aestivum L.) genotypes during dehydration stress	Illumina HiSeq 2000	To identify those miRNAs involved in dehydration stress tolerance.
PRJNA266709	BIRLA INSTITUTE OF TECHNOLOGY	Triticum aestivum cultivar:HD2329	Uncovering leaf rust responsive miRNAs in wheat (Triticum aestivum L.) using high-throughput sequencing and prediction of their targets through degradome analysis	Illumina MiSeq	The major threat to wheat production in past decades has been the rust epidemics. The present study was targeted towards understanding of the mechanism and functional characterization of miRNAs of wheat in response to leaf rust ingression. With the improvement in methods to explore the transcriptome, in recent years there have been great advances in identifying and understanding non-coding RNAs. Recent studies indicate involvements of miRNAs in plant development, growth and responses to biotic and abiotic stresses, adaptive responses, metabolism, and signal transduction. Therefore, Illumina's deep sequencing technology was used for transcriptome-wide identification of miRNAs and their expression profiling in response to leaf rust infection using mock and pathogen inoculated resistant (HD2329+Lr24) and susceptible (HD2329) near-isogenic wheat plants.
PRJNA242577	University of Electronic Science and Technology of China	Triticum aestivum	Identification of Novel miRNAs and miRNA Expression Profiling in Wheat Hybrid Necrosis	Illumina HiSeq 2000	Identification of Novel miRNAs and miRNA Expression Profiling in Wheat Hybrid Necrosis.
PRJNA241290	China Agricultural University	Triticum aestivum strain:Chinese spring Transcriptome or Gene expression	Whole-genome discovery of miRNAs and their targets in wheat (Triticum aestivum L.)	Illumina Genome Analyzer IIx	To identify as much wheat miRNAs and their targets
PRJNA171754	Indian Agricultural Research Institute	Triticum aestivum strain:HD2985, HD2329 Transcriptome or Gene expression	Identification of Putative RuBisCo Activase (TaRca1)—The Catalytic Chaperone Regulating Carbon Assimilatory Pathway in Wheat (Triticum aestivum) under the Heat Stress	Illumina HiSeq 2000	The study was conducted in order to find out the differential change in the transcript of tolerant and susceptible wheat cultivar under heat stress and to decipher the mechanism of thermotolerance in wheat by identifying novel genes and transcription factors involved in the pathways. Wheat cultivar HD2985 (thermotolerant) and HD2329 (thermosusceptible) were exposed to heat stress of 42 degree for 4h at pollination stage and samples were collected from both control and heat shock treated plants for further characterization.
PRJNA719092	The University of Adelaide	Small RNA, transcriptome and degradome analysis of the transgenerational heat stress response network in durum wheat (durum wheat)	Small RNA, Transcriptome and Degradome Analysis of the Transgenerational Heat Stress Response Network in Durum Wheat	Illumina NovaSeq 6000	Heat stress is a major limiting factor for grain yield and grain quality in wheat production. In crops, abiotic stresses have transgenerational effects and the mechanistic basis of stress memory is associated with epigenetic regulation. The current study presents the first systematic analysis of the transgenerational effects of post-anthesis heat stress in tetraploid wheat. Genotype-dependent response patterns to parental and progeny heat stress were found for the leaf physiological traits, harvest components, and grain quality traits measured. Parental heat stress had positive influence on the offspring under re-occurring stress for traits like chlorophyll content, grain weight, grain number and grain total starch content. Integrated sequencing analysis of the small RNAome, mRNA transcriptome, and mRNA degradome provided the first description of the molecular networks mediating heat stress adaption under transgenerational influence. The expression profile of 1771 microRNAs (733 being novel) and 66,559 genes was provided, with differentially expressed microRNAs and genes identified subject to the progeny treatment, parental treatment and tissue type factors. Gene Ontology and KEGG pathway annotation of stress responsive microRNAs-mRNA modules provided further information on their functional roles in biological processes like hormone homeostasis, signal transduction, and protein stabilization. Our results provide new sights on the molecular basis of transgenerational heat stress adaptation, which can be used for improving thermos-tolerance in breeding. Overall design: Analysis of small RNA transcriptome, mRNA transcriptome and mRNA degradome in eight biological pools (four treatment groups by two tissue types).
PRJNA706013	The University of Adelaide	Nitrogen starvation-responsive microRNAs are affected by transgenerational stress in durum wheat seedlings (durum wheat)	Nitrogen Starvation-Responsive MicroRNAs Are Affected by Transgenerational Stress in Durum Wheat Seedlings	Illumina NovaSeq 6000	Stress events have transgenerational effects that influence plant growth in the subsequent generation. In Mediterranean regions, water-deficit and heat (WH) stress is a frequent issue that negatively affects crop yield and quality. Nitrogen (N) is an essential plant macronutrient and often a yield-limiting factor for crops. Here, the response of durum wheat seedlings to N starvation under the transgenerational effects of WH stress were investigated in two genotypes. Both genotypes showed significant reduction in seedling height, leaf number, shoot and root weight (fresh and dry), primary root length and chlorophyll content under N starvation stress. However, in the WH stress-tolerant genotype, the reduction rate of most traits were lower in progeny from the stressed parents than progeny from the control parents. Small RNA sequencing identified 1,534 microRNAs in different treatment groups. Differentially expressed microRNAs (DEMs) were characterized subject to N starvation, parental stress and genotype factors, with their target genes identified in silico. GO and KEGG enrichment analyses revealed the biological functions associated with DEM-target modules in stress adaptation processes, which could contribute to the phenotypic differences observed in two genotypes. The study provides the first evidence of the transgenerational effects of WH stress on N starvation response in durum wheat. Overall design: Analysis of small RNA transcriptome in eight biological pools (two genotypes by two parental treatment by two progeny treatment).
PRJNA680308	The University of Adelaide	Small RNAs and their targets are associated with the transgenerational effects of water-deficit stress in durum wheat	Small RNAs and their targets are associated with the transgenerational effects of water-deficit stress in durum wheat	Illumina NovaSeq 6000	Water-deficit stress negatively affects wheat yield and quality. Abiotic stress on the parental plants during reproduction could have transgenerational effects on the progenies. Here we investigated the transgenerational influence of pre-anthesis water-deficit stress by detailed analysis of the yield components, grain quality traits, and physiological traits in durum wheat. Next-generation sequencing analysis profiled the small RNA-omics, mRNA transcriptomics, and mRNA degradomics in the progenies. Parental water-deficit stress had positive impacts on the progenies in certain traits like harvest index and protein content in given genotype. Small RNA-seq identified 1739 conserved and 774 novel microRNAs (miRNAs). Transcriptome-seq characterised the expression of 66,559 genes while degradome-seq profiled the miRNA-guided mRNA cleavage dynamics. Differentially expressed miRNAs and genes were identified, with significant regulatory patterns subject to trans- and inter- generational stress. Integrated analysis based on the three omics revealed the significant biological interactions between stress-responsive miRNA and targets, with possible contributions towards transgenerational stress tolerance via pathways such as hormone signalling and nutrient metabolism. Our study provides the first confirmation of the transgenerational effects of water-deficit stress in durum wheat. New insights gained on the molecular level indicate that key miRNA-mRNA modules are potential.
PRJNA644573	The University of Adelaide	Multi-omics analysis of small RNA, transcriptome and degradome in T. turgidum - regulatory networks of grain development and abiotic stress response (durum wheat)	Multi-Omics Analysis of Small RNA, Transcriptome, and Degradome in T. turgidum-Regulatory Networks of Grain Development and Abiotic Stress Response	Illumina NovaSeq 6000	Crop reproduction is highly sensitive to water-deficit and heat stress. The molecular networks of stress adaptation and grain development in tetraploid wheat (T. turgidum durum) are not well understood. Small RNAs (sRNAs) are important epigenetic regulators connecting the transcriptional and post-transcriptional regulatory networks. This study presents the first multi-omics analysis of the sRNAome, transcriptome and degradome in T. turgidum developing grains, under single and combined water-deficit and heat stress. We identified 690 microRNAs (miRNAs), with 84 being novel, from 118 sRNA libraries. Complete profiles of differentially expressed miRNA (DEMs) specific to genotypes, stress types and different reproductive time-points are provided. The first degradome-seq report for developing durum grains discovered a significant number of new target genes regulated by miRNAs post-transcriptionally. Transcriptome-seq profiled 53,146 T. turgidum genes, with differentially expressed genes (DEGs) enriched in functional categories such as nutrient metabolism, cellular differentiation, transport, reproductive development and hormone transduction pathways. miRNA-mRNA networks that affect grain characteristics such as starch synthesis and protein metabolism were constructed, based on integrated analysis of the three omics. This study provides a substantial amount of novel information on the post-transcriptional networks in T. turgidum grains, which will facilitate innovations for breeding programs aiming to improve crop resilience and grain quality. Overall design: Analysis of small RNA transcriptome in 118 samples (2 genotypes x4 treatments x5 time-points x3 biological replicates); Analysis of mRNA transcriptome in eight libraries (2 genotypes x4 treatments x1 time-point x1 pool of 3 biological replicates); Analysis of mRNA degradome in eight libraries (2 genotypes x4 treatments x1 time-point x1 pool of 3 biological replicates).
PRJNA641098	The University of Adelaide	ntegrated Analysis of Small RNA, Transcriptome, and Degradome Sequencing Reveals the Water-Deficit and Heat Stress Response Network in Durum Wheat (durum wheat)	Integrated Analysis of Small RNA, Transcriptome, and Degradome Sequencing Reveals the Water-Deficit and Heat Stress Response Network in Durum Wheat	Illumina NovaSeq 6000	Water-deficit and heat stress negatively impact crop production. Mechanisms underlying the response of durum wheat to such stresses are not well understood. With the new durum wheat genome assembly, we conducted the first multi-omics analysis with next-generation sequencing, providing a comprehensive description of the durum wheat small RNAome (sRNAome), mRNA transcriptome, and degradome. Single and combined water-deficit and heat stress were applied to stress-tolerant and -sensitive Australian genotypes to study their response at multiple time-points during reproduction. Analysis of 120 sRNA libraries identified 523 microRNAs (miRNAs), of which 55 were novel. Differentially expressed miRNAs (DEMs) were identified that had significantly altered expression subject to stress type, genotype, and time-point. Transcriptome sequencing identified 49,436 genes, with differentially expressed genes (DEGs) linked to processes associated with hormone homeostasis, photosynthesis, and signaling. With the first durum wheat degradome report, over 100,000 transcript target sites were characterized, and new miRNA-mRNA regulatory pairs were discovered. Integrated omics analysis identified key miRNA-mRNA modules (particularly, novel pairs of miRNAs and transcription factors) with antagonistic regulatory patterns subject to different stresses. GO (Gene Ontology) and KEGG (Kyoto Encyclopedia of Genes and Genomes) enrichment analysis revealed significant roles in plant growth and stress adaptation. Our research provides novel and fundamental knowledge, at the whole-genome level, for transcriptional and post-transcriptional stress regulation in durum wheat. Overall design: Analysis of small RNA transcriptome in 120 samples (2 genotypes x 4 treatments x 5 time-points x 3 biological replicates); Analysis of mRNA transcriptome in eight libraries (2 genotypes x 4 treatments x 1 time-point x 1 pool of 3 biological replicates); Analysis of mRNA degradome in eight libraries (2 genotypes x 4 treatments x 1 time-point x 1 pool of 3 biological replicates).
PRJNA600522	The University of Adelaide	Transgenerational effects of water-deficit and heat stress on germination and seedling vigour - new insights from durum wheat microRNAs (durum wheat)	Transgenerational Effects of Water-Deficit and Heat Stress on Germination and Seedling Vigour-New Insights from Durum Wheat microRNAs	Illumina HiSeq 2500	Water deficiency and heat stress can severely limit crop production and quality. Stress imposed on the parents during reproduction could have transgenerational effects on their progeny. Seeds with different origins can vary significantly in germination time-course and early growth. Here, we investigated how water-deficit and heat stress on parental durum wheat plants affected seedling establishment of the subsequent generation. One stress-tolerant and one stress-sensitive Australian durum genotype were used. Seeds were collected from parents with or without exposure to stress during reproduction. Generally stress on the previous generation negatively affected seed germination and seedling vigour, but to a lesser extent in the tolerant variety. Small RNA sequencing utilising the new durum genome assembly has revealed significant differences in microRNA (miRNA) expression in the two genotypes. A bioinformatics approach was used to identify multiple miRNA targets which have critical molecular functions in stress adaptation and plant development and could therefore contribute to the phenotypic differences observed. Our data provides the first confirmation of the transgenerational effects of reproductive-stage stress on germination and seedling establishment in durum wheat. New insights gained on the epigenetic level indicate that durum miRNAs could be key factors in optimising seed vigour for superior breeding germplasm and/or varieties. Overall design: Examine the seedling miRNA population from two seed source of two genotypes.
PRJNA473404	Institute of Agricultural Biology and Biotechnolog	Svevo Durum Wheat	Durum wheat genome highlights past domestication signatures and future improvement targets	Illumina HiSeq 2000	A reference genome sequence for Svevo durum wheat has been produced and annotated.
PRJNA310686	CNR - National Research Council	Triticum turgidum subsp. durum transcriptome sequences	Durum wheat miRNAs in response to nitrogen starvation at the grain filling stage	Illumina Genome Analyzer II	Discovery and analysis of microRNAs in durum wheat.
PRJNA285254	The University of Adelaide	Genome-wide identification of differentially expressed microRNAs in leaves and the developing head of four durum genotypes during water deficit stress	Genome-Wide Identification of MicroRNAs in Leaves and the Developing Head of Four Durum Genotypes during Water Deficit Stress	Illumina HiSeq 2500	MicroRNAs are endogenous small noncoding RNAs that play critical roles in plant abiotic stress responses. The interaction between miRNA-mRNA targets and their regulatory pathways in response to water deficit stress has been investigated in many plant species. However, the miRNA transcriptome of durum wheat (Triticum turgidum L. ssp. durum) is poorly characterised, with little known about miRNA functions related to water deficit stress. Yield loss in durum wheat can be exacerbated due to minimal rainfall in the early reproductive stages of development during Spring in Australia. This study describes genotypic differences in the miRNAome between water deficit tolerant/sensitive durum, using flag leaf and developing head tissue, and more specifically identifies miRNAs associated with water deficit stress. Results: Small RNA libraries (96 in total) were constructed from flag leaf and developing head tissues of four durum genotypes (Tamaroi, Yawa, EGA Bellaroi, Tjilkuri), with or without water deficit stress. Illumina sequencing and subsequent analysis detected 110 conserved miRNAs and 159 novel candidate miRNA hairpins. Statistical analysis of the abundance of sequencing reads revealed 66 conserved miRNAs and five novel miRNA hairpins showing differential expression under water deficit stress. During stress, several conserved and novel miRNAs showed unambiguous inverted regulatory profiles between the durum genotypes studied. Several miRNAs were also identified to have different abundance in the flag leaf compared to the developing head regardless of treatment. Predicted mRNA targets from four novel durum miRNAs were characterised using Gene Ontology (GO) which revealed functions common to stress responses and plant development. Conclusion: For the first time, we present a comprehensive study of the miRNA transcriptome of flag leaf and developing head tissues in different durum genotypes under water deficit stress. The identification of differentially expressed miRNAs provides molecular evidence that miRNAs are potential determinants of water stress tolerance in durum wheat. GO analysis of predicted targets contributes to the understanding of genotype-specific physiological responses leading to stress tolerance capacity. Further functional analysis of specific stress responsive miRNAs identified, and their interaction with mRNA targets is ongoing and will assist in developing future durum wheat varieties with enhanced water deficit stress tolerance. Overall design: A total of 96 small RNA libraries were analysed [4 durum genotypes * 2 tissue types * 2 treatment groups (control and water stress) * 6 biological replicates] in this study. Please see Methods, Liu et al.(2015)
PRJNA383463	Nanjing Agricultural University	Asymmetrical changes in chromatin and small RNAs contribute to altered gene expression and endosperm development in resynthesized wheat allotetraploids	Asymmetrical changes of gene expression, small RNAs and chromatin in two resynthesized wheat allotetraploids	Illumina HiSeq 2000	We performed genome-wide analyses of mRNA and small RNA transcriptomes in the endosperm of two synthetic wheats SSAA and AADD that differ in seed fertility and size. Transcriptomes between the endosperm and root of AADD were also analyzed to test a developmental role. Immunostaining experiments were performed to analyze the changes of histone H3K9me2 modifications in the chromosomes of two wheat allotetraploids and their progenitors.
PRJNA915324	Institute of Genetics and Developmental Biology	Wheat RNA sequencing	New insights on the evolution of nucleolar dominance in newly resynthesized hexaploid wheat Triticum Zhukovskyi	Illumina HiSeq 2500	RNA-seq was carried out using material from seedling betweenl AG x A hybridization F1 and AG x D hybridization F1 .
PRJDB4663	KOBE_U	Deep sequencing of small RNAs in grass-clump dwarf phenotype of abnormal growth triploids in interspecific crosses between tetraploid wheat and Aegilops tauschii	Global gene expression profiling related to temperature-sensitive growth abnormalities in interspecific crosses between tetraploid wheat and Aegilops tauschii	Illumina HiSeq 2000	Triploid wheat hybrids between tetraploid wheat and Aegilops tauschii sometimes show abnormal growth phenotypes, and the growth abnormalities inhibit generation of wheat synthetic hexaploids. In type II necrosis, one of the growth abnormalities, necrotic cell death accompanied by marked growth repression occurs only under low temperature conditions. At normal temperature, the type II necrosis lines show grass-clump dwarfism with no necrotic symptoms, excess tillers, more severe dwarfism or delayed flowering. We compared small RNA expression profiles in crown tissues to characterize the temperature-dependent phenotypic plasticity. Some microRNAs, including miR156, were up-regulated, whereas the levels of transcripts of the miR156 target genes SPLs, known to inhibit tiller and branch number, were reduced in crown tissues of the grass-clump dwarf lines at the normal temperature. Dramatic alteration of gene expression profiles, including miRNA levels, in crown tissues is associated with the temperature-dependent phenotypic plasticity in type II necrosis/grass-clump dwarf wheat hybrids.
PRJNA742257	Inner Mongolia Agricultural University	Agropyron mongolicum cultivar:Agropyron mongolicum keng Genome sequencing and assembly	Integrated analysis of small RNAs, transcriptome and degradome sequencing reveal the drought stress network in Agropyron mongolicum Keng	Illumina HiSeq 2500	The seeds of Agropyron mongolicum Keng were collected from Salaqi Agropyron mongolicum Keng experimental base Inner Mongolia Agricultural University Inner Mongolia Autonomous Region China Select full seeds remove lemma disinfect them with sodium hypochlorite solution for 15 minutes then wash them with sterilized distilled water for 5 times put them into germination box and cultivate them in indoor incubator set the temperature at 24 degrees centigrade photoperiod for 16 hours supplement evaporation water every day until the seedlings grow to the stage of three leaves one heart The leaves of Agropyron mongolicum Keng treated with drought for 12 h 24 h 48 h 3 D 5 d 7 d and rewatered for 24 h were sampled The leaves without drought treatment were set as control and stored in liquid nitrogen in pre cooled cryopreservation tube it was quickly put into the pre freezing tube and stored in liquid nitrogen.
PRJNA431719	Inner Mongolia Agricultural University	Agropyron mongolicum Keng Raw sequence reads	Functional Analysis of Three miRNAs in Agropyron mongolicum Keng under Drought Stress	Illumina HiSeq 2500	Agropyron mongolicum Keng is a predominant perennial forage in the steppes of Inner Mongolian Plateau, China. It is known to be tolerant to drought, low temperature and salinity, and is also valuable resource in wheat improvement. However, the corresponding molecular mechanism underlying the adaptation to water shortage in A. mongolicum remains uncharacterized.In this study, the microRNA of the Agropyron mongolicum was identified under the conditions of control and drought treatment.This would provide important information for further gene expression and functional genomics studies, confirmed our results on the molecular mechanisms of drought response in A. mongolicum and useful resources for crop drought resistant breeding.
PRJNA541381	Northwest Agriculture & Forestry University	sRNA sequencing of Psathyrostachys huashanica	Genome-wide miRNA expression profiling in Psathyrostachys huashanica reveals insights into the resistance response to barley yellow dwarf virus-GAV infection	Illumina HiSeq 2500	sRNA sequencing of different time points of Psathyrostachys huashanica infected with BYDV-GAV.

Run	Library Name	LibrarySelection	Ecotype	Age	Tissue	Cultivar	Sample Name	geo_loc_name
SRR12708724	ZN_3	cDNA	TibetanHulless Barley	One year	leaves	Kunlun14 and Z1140	Hordeum vulgare L. var. nudum Hook. f.	China Xining
SRR12708725	ZN_2	cDNA	TibetanHulless Barley	One year	leaves	Kunlun14 and Z1140	Hordeum vulgare L. var. nudum Hook. f.	China Xining
SRR12708726	ZN_1	cDNA	TibetanHulless Barley	One year	leaves	Kunlun14 and Z1140	Hordeum vulgare L. var. nudum Hook. f.	China Xining
SRR12708727	KL14S_4	cDNA	TibetanHulless Barley	One year	leaves	Kunlun14 and Z1140	Hordeum vulgare L. var. nudum Hook. f.	China Xining
SRR12708728	KL14S_2	cDNA	TibetanHulless Barley	One year	leaves	Kunlun14 and Z1140	Hordeum vulgare L. var. nudum Hook. f.	China Xining
SRR12708729	KL14S_1	cDNA	TibetanHulless Barley	One year	leaves	Kunlun14 and Z1140	Hordeum vulgare L. var. nudum Hook. f.	China Xining
SRR12708730	KL14N_4	cDNA	TibetanHulless Barley	One year	leaves	Kunlun14 and Z1140	Hordeum vulgare L. var. nudum Hook. f.	China Xining
SRR12708731	KL14N_3	cDNA	TibetanHulless Barley	One year	leaves	Kunlun14 and Z1140	Hordeum vulgare L. var. nudum Hook. f.	China Xining
SRR12708732	ZS_4	cDNA	TibetanHulless Barley	One year	leaves	Kunlun14 and Z1140	Hordeum vulgare L. var. nudum Hook. f.	China Xining
SRR12708733	ZS_3	cDNA	TibetanHulless Barley	One year	leaves	Kunlun14 and Z1140	Hordeum vulgare L. var. nudum Hook. f.	China Xining
SRR12708734	ZS_2	cDNA	TibetanHulless Barley	One year	leaves	Kunlun14 and Z1140	Hordeum vulgare L. var. nudum Hook. f.	China Xining
SRR12708735	ZS_1	cDNA	TibetanHulless Barley	One year	leaves	Kunlun14 and Z1140	Hordeum vulgare L. var. nudum Hook. f.	China Xining
SRR12708736	ZN_4	cDNA	TibetanHulless Barley	One year	leaves	Kunlun14 and Z1140	Hordeum vulgare L. var. nudum Hook. f.	China Xining
SRR12708737	KL14N_2	cDNA	TibetanHulless Barley	One year	leaves	Kunlun14 and Z1140	Hordeum vulgare L. var. nudum Hook. f.	China Xining
SRR12708738	KL14N_1	cDNA	TibetanHulless Barley	One year	leaves	Kunlun14 and Z1140	Hordeum vulgare L. var. nudum Hook. f.	China Xining

Run	Library Name	LibrarySelection	Tissue	Cultivar	Sample Name
SRR1166427	Control	PCR	Endosperm	PI 564601	Sinai_eIF4E locus
SRR1166403	Control	PCR	Endosperm	PI 542707	Dryland_eIF4E
SRR1166399	Control	PCR	Endosperm	PI 510559	Peru_eIF4E
SRR1166398	Control	PCR	Endosperm	PI 1862613	Control_Japan_eIF4E
SRR1166397	QI	PCR	Endosperm	Qasr Ibrim strain	QI_eIF4E
SRR1166396	QI	PCR	Endosperm	Qasr Ibrim strain	QI_sukkula
SRR1166395	QI	PCR	Endosperm	Qasr Ibrim strain	QI_Mla
SRR1166394	QI	PCR	Endosperm	Qasr Ibrim strain	QI_Lr34
SRR1166393	QI	PCR	Endosperm	Qasr Ibrim strain	QI_AGL97
SRR1166379	QI_LX	PCR	Endosperm	Qasr Ibrim strain	Qasr Ibrim barley, AGL97

Run	Library Name	LibrarySelection	Ecotype	Stage	Tissue	Sample Name	geo_loc_name
SRR8797395	FN_1	RANDOM PCR	Qinghai-Tibet Plateau	seedling	leaf	HTL	China: Tibet
SRR8797396	FN_2	RANDOM PCR	Qinghai-Tibet Plateau	seedling	leaf	HTL	China: Tibet
SRR8797397	ON_1	RANDOM PCR	Qinghai-Tibet Plateau	seedling	leaf	HTL	China: Tibet
SRR8797398	ON_2	RANDOM PCR	Qinghai-Tibet Plateau	seedling	leaf	HTL	China: Tibet
SRR8797399	HN_1	RANDOM PCR	Qinghai-Tibet Plateau	seedling	leaf	HTL	China: Tibet
SRR8797400	HN_2	RANDOM PCR	Qinghai-Tibet Plateau	seedling	leaf	HTL	China: Tibet

Run	Library Name	LibrarySelection	Age	Tissue	Cultivar	Sample Name	geo_loc_name	Treatment	Replicate
SRR8265663	XZ16-S-Salt-2	RT-PCR	about 25-day-old	Shoot	Tibetan wild barley accession XZ16	XZ16-S-Salt-2	China: Qinghai Tibet Plateau	200mM NaCl	replicate 2
SRR8265664	XZ16-S-Salt	RT-PCR	about 25-day-old	Shoot	Tibetan wild barley accession XZ16	XZ16-S-Salt-1	China: Qinghai Tibet Plateau	200mM NaCl	replicate 1
SRR8265665	XZ16-R-Control	RT-PCR	about 25-day-old	Root	Tibetan wild barley accession XZ16	XZ16-R-Control-1	China: Qinghai Tibet Plateau	control	replicate 1
SRR8265667	GP-R-Control-2	RT-PCR	about 25-day-old	Root	Golden Promise	GP-R-Control-2	-	control	replicate 2
SRR8265668	XZ16-R-Control-2	RT-PCR	about 25-day-old	Root	Tibetan wild barley accession XZ16	XZ16-R-Control-2	China: Qinghai Tibet Plateau	control	replicate 2
SRR8265669	GP-R-Control	RT-PCR	about 25-day-old	Root	Golden Promise	GP-R-Control-1	-	control	replicate 1
SRR8265670	XZ16-R-Salt-2	RT-PCR	about 25-day-old	Root	Tibetan wild barley accession XZ16	XZ16-R-Salt-2	China: Qinghai Tibet Plateau	200mM NaCl	replicate 2
SRR8265671	GP-R-Salt	RT-PCR	about 25-day-old	Root	Golden Promise	GP-R-Salt-1	-	200mM NaCl	replicate 1
SRR8265672	GP-S-Control-2	RT-PCR	about 25-day-old	Shoot	Golden Promise	GP-S-Control-2	-	control	replicate 2
SRR8265673	XZ16-R-Salt	RT-PCR	about 25-day-old	Root	Tibetan wild barley accession XZ16	XZ16-R-Salt-1	China: Qinghai Tibet Plateau	200mM NaCl	replicate 1
SRR8265674	GP-S-Control	RT-PCR	about 25-day-old	Shoot	Golden Promise	GP-S-Control-1	-	control	replicate 1
SRR8265675	GP-R-Salt-2	RT-PCR	about 25-day-old	Root	Golden Promise	GP-R-Salt-2	-	200mM NaCl	replicate 2
SRR8265676	GP-S-Salt-2	RT-PCR	about 25-day-old	Shoot	Golden Promise	GP-S-Salt-2	-	200mM NaCl	replicate 2
SRR8265677	GP-S-Salt	RT-PCR	about 25-day-old	Shoot	Golden Promise	GP-S-Salt-1	-	200mM NaCl	replicate 1
SRR8265678	XZ16-S-Control-2	RT-PCR	about 25-day-old	Shoot	Tibetan wild barley accession XZ16	XZ16-S-Control-2	China: Qinghai Tibet Plateau	control	replicate 2
SRR8265679	XZ16-S-Control	RT-PCR	about 25-day-old	Shoot	Tibetan wild barley accession XZ16	XZ16-S-Control-1	China: Qinghai Tibet Plateau	control	replicate 1

Run	Library Name	LibrarySelection	Stage	Tissue	Cultivar	Sample Name
SRR18652253	BSMV-SDN1gs/+BYDV-1	size fractionation	seedling	leaf	Golden Promise	BSMV-SDN1gs/+BYDV-1
SRR18652254	BSMV-EV/+BYDV-3	size fractionation	seedling	leaf	Golden Promise	BSMV-EV/+BYDV-3
SRR18652255	BSMV-EV/+BYDV-2	size fractionation	seedling	leaf	Golden Promise	BSMV-EV/+BYDV-2
SRR18652256	BSMV-EV/+BYDV-1	size fractionation	seedling	leaf	Golden Promise	BSMV-EV/+BYDV-1
SRR18652257	BSMV-SDN1gs/-BYDV-3	size fractionation	seedling	leaf	Golden Promise	BSMV-SDN1gs/-BYDV-3
SRR18652258	BSMV-SDN1gs/-BYDV-2	size fractionation	seedling	leaf	Golden Promise	BSMV-SDN1gs/-BYDV-2
SRR18652259	BSMV-SDN1gs/-BYDV-1	size fractionation	seedling	leaf	Golden Promise	BSMV-SDN1gs/-BYDV-1
SRR18652260	BSMV-EV/-BYDV-3	size fractionation	seedling	leaf	Golden Promise	BSMV-EV/-BYDV-3
SRR18652261	BSMV-SDN1gs/+BYDV-3	size fractionation	seedling	leaf	Golden Promise	BSMV-SDN1gs/+BYDV-3
SRR18652262	BSMV-SDN1gs/+BYDV-2	size fractionation	seedling	leaf	Golden Promise	BSMV-SDN1gs/+BYDV-2
SRR18652263	BSMV-EV/-BYDV-2	size fractionation	seedling	leaf	Golden Promise	BSMV-EV/-BYDV-2
SRR18652264	BSMV-EV/-BYDV-1	size fractionation	seedling	leaf	Golden Promise	BSMV-EV/-BYDV-1

Run	Library Name	LibrarySelection	Ecotype	Stage	Tissue	Cultivar	Sample Name
SRR18651738	SB_4_1	size fractionation	SnRK1-YFP	seedling stage	Root	Golden Promise	SB_4_1
SRR18651739	M_14_3	size fractionation	WT	seedling stage	Root	Golden Promise	M_14_3
SRR18651740	M_14_2	size fractionation	WT	seedling stage	Root	Golden Promise	M_14_2
SRR18651741	M_14_1	size fractionation	WT	seedling stage	Root	Golden Promise	M_14_1
SRR18651742	M_7_3	size fractionation	WT	seedling stage	Root	Golden Promise	M_7_3
SRR18651743	M_7_2	size fractionation	WT	seedling stage	Root	Golden Promise	M_7_2
SRR18651744	M_7_1	size fractionation	WT	seedling stage	Root	Golden Promise	M_7_1
SRR18651745	M_4_3	size fractionation	WT	seedling stage	Root	Golden Promise	M_4_3
SRR18651746	SB_14_3	size fractionation	SnRK1-YFP	seedling stage	Root	Golden Promise	SB_14_3
SRR18651747	SB_14_2	size fractionation	SnRK1-YFP	seedling stage	Root	Golden Promise	SB_14_2
SRR18651748	SB_14_1	size fractionation	SnRK1-YFP	seedling stage	Root	Golden Promise	SB_14_1
SRR18651749	SB_7_3	size fractionation	SnRK1-YFP	seedling stage	Root	Golden Promise	SB_7_3
SRR18651750	SB_7_2	size fractionation	SnRK1-YFP	seedling stage	Root	Golden Promise	SB_7_2
SRR18651751	SB_7_1	size fractionation	SnRK1-YFP	seedling stage	Root	Golden Promise	SB_7_1
SRR18651752	SB_4_3	size fractionation	SnRK1-YFP	seedling stage	Root	Golden Promise	SB_4_3
SRR18651753	SB_4_2	size fractionation	SnRK1-YFP	seedling stage	Root	Golden Promise	SB_4_2
SRR18651754	M_4_2	size fractionation	WT	seedling stage	Root	Golden Promise	M_4_2
SRR18651755	M_4_1	size fractionation	WT	seedling stage	Root	Golden Promise	M_4_1

Run	Library Name	LibrarySelection	Age	Tissue	Cultivar	Sample Name
SRR18331513	FCH7NV5BBXY	RANDOM PCR	Triple mound	SAM	Morex	HVSAMTM
SRR18331514	FCH7NV5BBXX	RANDOM PCR	Double ridge	SAM	Morex	HvSAMDR

Run	Library Name	LibrarySelection	Age	Tissue	Cultivar	Sample Name	geo_loc_name
SRR18094627	RSB15248_10	RANDOM	10 days	leaf	Margret	EVplus	Germany: Aachen
SRR18094628	RSB15248_9	RANDOM	11 days	leaf	Margret	P40	Germany: Aachen
SRR18094629	RSB15248_8	RANDOM	11 days	leaf	Margret	P40	Germany: Aachen
SRR18094630	RSB15248_7	RANDOM	11 days	leaf	Margret	P40	Germany: Aachen
SRR18094631	RSB15248_6	RANDOM	11 days	leaf	-	Hau	Germany: Aachen
SRR18094632	RSB15248_5	RANDOM	11 days	leaf	-	Hau	Germany: Aachen
SRR18094633	RSB15248_4	RANDOM	11 days	leaf	-	Hau	Germany: Aachen
SRR18094634	RSB15248_3	RANDOM	11 days	leaf	Margret	Epi	Germany: Aachen
SRR18094635	RSB15248_18	RANDOM	11 days	leaf	-	Myc	Germany: Aachen
SRR18094636	RSB15248_17	RANDOM	11 days	leaf	-	Myc	Germany: Aachen
SRR18094637	RSB15248_16	RANDOM	11 days	leaf	-	Myc	Germany: Aachen
SRR18094638	RSB15248_15	RANDOM	10 days	leaf	Margret	EVplus	Germany: Aachen
SRR18094639	RSB15248_14	RANDOM	10 days	leaf	Margret	EVminus	Germany: Aachen
SRR18094640	RSB15248_13	RANDOM	10 days	leaf	Margret	EVminus	Germany: Aachen
SRR18094641	RSB15248_12	RANDOM	10 days	leaf	Margret	EVminus	Germany: Aachen
SRR18094642	RSB15248_11	RANDOM	10 days	leaf	Margret	EVplus	Germany: Aachen
SRR18094643	RSB15248_2	RANDOM	11 days	leaf	Margret	Epi	Germany: Aachen
SRR18094644	RSB15248_1	RANDOM	11 days	leaf	Margret	Epi	Germany: Aachen

Run	LibrarySelection	Sample Name	geo_loc_name
ERR4566424	size fractionation	S12	Australia
ERR4566423	size fractionation	S2	Australia
ERR4566422	size fractionation	S0	Australia

Run	LibrarySelection	Tissue	Cultivar	Sample Name	Treatment	Replicate
SRR13397555	size fractionation	dry embryo + scutellum	Damazy	GSM5012470	Rc - after seed regeneration; non-stored control	rep 1
SRR13397554	size fractionation	dry embryo + scutellum	Damazy	GSM5012469	Rc - after seed regeneration; non-stored control	rep 3
SRR13397553	size fractionation	dry embryo + scutellum	Damazy	GSM5012469	Rc - after seed regeneration; non-stored control	rep 2
SRR13397552	size fractionation	dry embryo + scutellum	Damazy	GSM5012467	Rc - after seed regeneration; non-stored control	rep 1
SRR13397551	size fractionation	dry embryo + scutellum	Damazy	GSM5012466	Lv - seeds after long-term storage 1972-2018 (germination 2%)	rep 3
SRR13397550	size fractionation	dry embryo + scutellum	Damazy	GSM5012465	Lv - seeds after long-term storage 1972-2018 (germination 2%)	rep 2
SRR13397549	size fractionation	dry embryo + scutellum	Damazy	GSM5012464	Lv - seeds after long-term storage 1972-2018 (germination 2%)	rep 1
SRR13397548	size fractionation	dry embryo + scutellum	Damazy	GSM5012463	Hv - seeds after long-term storage 1972-2018 (germination 86,7%)	rep 3
SRR13397547	size fractionation	dry embryo + scutellum	Damazy	GSM5012462	Hv - seeds after long-term storage 1972-2018 (germination 86,7%)	rep 2
SRR13397546	size fractionation	dry embryo + scutellum	Damazy	GSM5012461	Hv - seeds after long-term storage 1972-2018 (germination 86,7%)	rep 1

Run	LibrarySelection	Time	Tissue	Cultivar	Phenotype	Sample Name	Treatment
SRR13183018	size fractionation	7 days	shoot	XZ153	low K tolerant	XZ153	low K
SRR13183017	size fractionation	7 days	shoot	XZ153	low K tolerant	XZ153	low K
SRR13183016	size fractionation	7 days	shoot	XZ153	low K tolerant	XZ153	low K
SRR13183015	size fractionation	7 days	shoot	XZ153	low K tolerant	XZ153	control
SRR13183014	size fractionation	7 days	shoot	XZ153	low K tolerant	XZ153	control
SRR13183013	size fractionation	7 days	shoot	XZ153	low K tolerant	XZ153	control
SRR13183012	size fractionation	7 days	shoot	ZD9	low K sensitive	ZD9	low K
SRR13183011	size fractionation	7 days	shoot	ZD9	low K sensitive	ZD9	low K
SRR13183010	size fractionation	7 days	shoot	ZD9	low K sensitive	ZD9	low K
SRR13183009	size fractionation	7 days	shoot	ZD9	low K sensitive	ZD9	control
SRR13183008	size fractionation	7 days	shoot	ZD9	low K sensitive	ZD9	control
SRR13183007	size fractionation	7 days	shoot	ZD9	low K sensitive	ZD9	control
SRR13183006	size fractionation	2 days	shoot	XZ153	low K tolerant	XZ153	low K
SRR13183005	size fractionation	2 days	shoot	XZ153	low K tolerant	XZ153	low K
SRR13183004	size fractionation	2 days	shoot	XZ153	low K tolerant	XZ153	low K
SRR13183003	size fractionation	2 days	shoot	XZ153	low K tolerant	XZ153	control
SRR13183002	size fractionation	2 days	shoot	XZ153	low K tolerant	XZ153	control
SRR13183001	size fractionation	2 days	shoot	XZ153	low K tolerant	XZ153	control
SRR13183000	size fractionation	2 days	shoot	ZD9	low K sensitive	ZD9	low K
SRR13182999	size fractionation	2 days	shoot	ZD9	low K sensitive	ZD9	low K
SRR13182998	size fractionation	2 days	shoot	ZD9	low K sensitive	ZD9	low K
SRR13182997	size fractionation	2 days	shoot	ZD9	low K sensitive	ZD9	control
SRR13182996	size fractionation	2 days	shoot	ZD9	low K sensitive	ZD9	control
SRR13182995	size fractionation	2 days	shoot	ZD9	low K sensitive	ZD9	control

Run	Library Name	Age	Tissue	Cultivar	Sample Name	geo_loc_name	Replicate
SRR11881520	Hvu-1.0-1_M_sRNA-seq	1.0 mm anther	Anther	Morex	Hvu-1.0-1_M_sRNA-seq	USA: St. Louis	replicate 1
SRR11881531	Hvu-0.8-3_M_sRNA-seq	0.8 mm anther	Anther	Morex	Hvu-0.8-3_M_sRNA-seq	USA: St. Louis	replicate 3
SRR11881552	Hvu-0.8-1_M_sRNA-seq	0.8 mm anther	Anther	Morex	Hvu-0.8-1_M_sRNA-seq	USA: St. Louis	replicate 1
SRR11881563	Hvu-0.6-3_M_sRNA-seq	0.6 mm anther	Anther	Morex	Hvu-0.6-3_M_sRNA-seq	USA: St. Louis	replicate 3
SRR11881574	Hvu-0.6-2_M_sRNA-seq	0.6 mm anther	Anther	Morex	Hvu-0.6-2_M_sRNA-seq	USA: St. Louis	replicate 2
SRR11881585	Hvu-0.6-1_M_sRNA-seq	0.6 mm anther	Anther	Morex	Hvu-0.6-1_M_sRNA-seq	USA: St. Louis	replicate 1
SRR11881596	Hvu-0.4-4_M_sRNA-seq	0.4 mm anther	Anther	Morex	Hvu-0.4-4_M_sRNA-seq	USA: St. Louis	replicate 3
SRR11881605	Hvu-1.8-3_GP_sRNA-seq	1.8 mm anther	Anther	Golden Promise	Hvu-1.8-3_GP_sRNA-seq	USA: St. Louis	replicate 3
SRR11881606	Hvu-1.8-2_GP_sRNA-seq	1.8 mm anther	Anther	Golden Promise	Hvu-1.8-2_GP_sRNA-seq	USA: St. Louis	replicate 2
SRR11881607	Hvu-0.4-2_M_sRNA-seq	0.4 mm anther	Anther	Morex	Hvu-0.4-2_M_sRNA-seq	USA: St. Louis	replicate 2
SRR11881608	Hvu-1.8-1_GP_sRNA-seq	1.8 mm anther	Anther	Golden Promise	Hvu-1.8-1_GP_sRNA-seq	USA: St. Louis	replicate 1
SRR11881609	Hvu-1.4-3_GP_sRNA-seq	1.4 mm anther	Anther	Golden Promise	Hvu-1.4-3_GP_sRNA-seq	USA: St. Louis	replicate 3
SRR11881610	Hvu-1.4-2_GP_sRNA-seq	1.4 mm anther	Anther	Golden Promise	Hvu-1.4-2_GP_sRNA-seq	USA: St. Louis	replicate 2
SRR11881611	Hvu-1.4-1_GP_sRNA-seq	1.4 mm anther	Anther	Golden Promise	Hvu-1.4-1_GP_sRNA-seq	USA: St. Louis	replicate 1
SRR11881612	Hvu-1.0-4_GP_sRNA-seq	1.0 mm anther	Anther	Golden Promise	Hvu-1.0-4_GP_sRNA-seq	USA: St. Louis	replicate 3
SRR11881613	Hvu-0.8-2_M_sRNA-seq	0.8 mm anther	Anther	Morex	Hvu-0.8-2_M_sRNA-seq	USA: St. Louis	replicate 2
SRR11881614	Hvu-0.2-2_M_sRNA-seq	0.2 mm anther	Anther	Morex	Hvu-0.2-2_M_sRNA-seq	USA: St. Louis	replicate 2
SRR11881615	Hvu-0.2-1_M_sRNA-seq	0.2 mm anther	Anther	Morex	Hvu-0.2-1_M_sRNA-seq	USA: St. Louis	replicate 1
SRR11881616	Hvu-1.0-2_GP_sRNA-seq	1.0 mm anther	Anther	Golden Promise	Hvu-1.0-2_GP_sRNA-seq	USA: St. Louis	replicate 2
SRR11881617	Hvu-1.0-1_GP_sRNA-seq	1.0 mm anther	Anther	Golden Promise	Hvu-1.0-1_GP_sRNA-seq	USA: St. Louis	replicate 1
SRR11881618	Hvu-0.8-3_GP_sRNA-seq	0.8 mm anther	Anther	Golden Promise	Hvu-0.8-3_GP_sRNA-seq	USA: St. Louis	replicate 3
SRR11881619	Hvu-0.8-2_GP_sRNA-seq	0.8 mm anther	Anther	Golden Promise	Hvu-0.8-2_GP_sRNA-seq	USA: St. Louis	replicate 2
SRR11881620	Hvu-0.8-1_GP_sRNA-seq	0.8 mm anther	Anther	Golden Promise	Hvu-0.8-1_GP_sRNA-seq	USA: St. Louis	replicate 1
SRR11881621	Hvu-0.4-1_M_sRNA-seq	0.4 mm anther	Anther	Morex	Hvu-0.4-1_M_sRNA-seq	USA: St. Louis	replicate 1
SRR11881622	Hvu-0.6-3_GP_sRNA-seq	0.6 mm anther	Anther	Golden Promise	Hvu-0.6-3_GP_sRNA-seq	USA: St. Louis	replicate 3
SRR11881623	Hvu-0.6-2_GP_sRNA-seq	0.6 mm anther	Anther	Golden Promise	Hvu-0.6-2_GP_sRNA-seq	USA: St. Louis	replicate 2
SRR11881624	Hvu-0.6-1_GP_sRNA-seq	0.6 mm anther	Anther	Golden Promise	Hvu-0.6-1_GP_sRNA-seq	USA: St. Louis	replicate 1
SRR11881625	Hvu-0.4-3_GP_sRNA-seq	0.4 mm anther	Anther	Golden Promise	Hvu-0.4-3_GP_sRNA-seq	USA: St. Louis	replicate 3
SRR11881626	Hvu-0.4-2_GP_sRNA-seq	0.4 mm anther	Anther	Golden Promise	Hvu-0.4-2_GP_sRNA-seq	USA: St. Louis	replicate 2
SRR11881627	Hvu-0.4-1_GP_sRNA-seq	0.4 mm anther	Anther	Golden Promise	Hvu-0.4-1_GP_sRNA-seq	USA: St. Louis	replicate 1
SRR11881628	Hvu-0.2-3_GP_sRNA-seq	0.2 mm anther	Anther	Golden Promise	Hvu-0.2-3_GP_sRNA-seq	USA: St. Louis	replicate 3
SRR11881629	Hvu-0.2-2_GP_sRNA-seq	0.2 mm anther	Anther	Golden Promise	Hvu-0.2-2_GP_sRNA-seq	USA: St. Louis	replicate 2
SRR11881630	Hvu-0.2-1_GP_sRNA-seq	0.2 mm anther	Anther	Golden Promise	Hvu-0.2-1_GP_sRNA-seq	USA: St. Louis	replicate 1
SRR11881631	Hvu-1.8-3_M_sRNA-seq	1.8 mm anther	Anther	Morex	Hvu-1.8-3_M_sRNA-seq	USA: St. Louis	replicate 3
SRR11881632	Hvu-0.2-3_M_sRNA-seq	0.2 mm anther	Anther	Morex	Hvu-0.2-3_M_sRNA-seq	USA: St. Louis	replicate 3
SRR11881633	Hvu-1.8-2_M_sRNA-seq	1.8 mm anther	Anther	Morex	Hvu-1.8-2_M_sRNA-seq	USA: St. Louis	replicate 2
SRR11881634	Hvu-1.8-1_M_sRNA-seq	1.8 mm anther	Anther	Morex	Hvu-1.8-1_M_sRNA-seq	USA: St. Louis	replicate 1
SRR11881635	Hvu-1.4-4_M_sRNA-seq	1.4 mm anther	Anther	Morex	Hvu-1.4-4_M_sRNA-seq	USA: St. Louis	replicate 3
SRR11881636	Hvu-1.4-3_M_sRNA-seq	1.4 mm anther	Anther	Morex	Hvu-1.4-3_M_sRNA-seq	USA: St. Louis	replicate 2
SRR11881637	Hvu-1.4-1_M_sRNA-seq	1.4 mm anther	Anther	Morex	Hvu-1.4-1_M_sRNA-seq	USA: St. Louis	replicate 1
SRR11881638	Hvu-1.0-3_M_sRNA-seq	1.0 mm anther	Anther	Morex	Hvu-1.0-3_M_sRNA-seq	USA: St. Louis	replicate 3
SRR11881639	Hvu-1.0-2_M_sRNA-seq	1.0 mm anther	Anther	Morex	Hvu-1.0-2_M_sRNA-seq	USA: St. Louis	replicate 2
SRR11881537	Tae-1.8-3_F_sRNA-seq	1.8 mm anther	Anther	Fielder	Tae-1.8-3_F_sRNA-seq	USA: St. Louis	biological replicate 3
SRR11881538	Tae-1.8-2_F_sRNA-seq	1.8 mm anther	Anther	Fielder	Tae-1.8-2_F_sRNA-seq	USA: St. Louis	biological replicate 2
SRR11881539	Tae-1.8-1_F_sRNA-seq	1.8 mm anther	Anther	Fielder	Tae-1.8-1_F_sRNA-seq	USA: St. Louis	biological replicate 1
SRR11881540	Tae-1.4-4_F_sRNA-seq	1.4 mm anther	Anther	Fielder	Tae-1.4-4_F_sRNA-seq	USA: St. Louis	biological replicate 3
SRR11881541	Tae-1.4-3_F_sRNA-seq	1.4 mm anther	Anther	Fielder	Tae-1.4-3_F_sRNA-seq	USA: St. Louis	biological replicate 2
SRR11881542	Tae-1.4-1_F_sRNA-seq	1.0 mm anther	Anther	Fielder	Tae-1.4-1_F_sRNA-seq	USA: St. Louis	biological replicate 1
SRR11881543	Tae-1.0-3_F_sRNA-seq	1.0 mm anther	Anther	Fielder	Tae-1.0-3_F_sRNA-seq	USA: St. Louis	biological replicate 3
SRR11881544	Tae-1.0-2_F_sRNA-seq	1.0 mm anther	Anther	Fielder	Tae-1.0-2_F_sRNA-seq	USA: St. Louis	biological replicate 2
SRR11881545	Tae-1.0-1_F_sRNA-seq	1.0 mm anther	Anther	Fielder	Tae-1.0-1_F_sRNA-seq	USA: St. Louis	biological replicate 1
SRR11881546	Tae-0.8-3_F_sRNA-seq	0.8 mm anther	Anther	Fielder	Tae-0.8-3_F_sRNA-seq	USA: St. Louis	biological replicate 3
SRR11881547	Tae-0.8-2_F_sRNA-seq	0.8 mm anther	Anther	Fielder	Tae-0.8-2_F_sRNA-seq	USA: St. Louis	biological replicate 2
SRR11881548	Tae-0.8-1_F_sRNA-seq	0.8 mm anther	Anther	Fielder	Tae-0.8-1_F_sRNA-seq	USA: St. Louis	biological replicate 1
SRR11881549	Tae-0.6-3_F_sRNA-seq	0.6 mm anther	Anther	Fielder	Tae-0.6-3_F_sRNA-seq	USA: St. Louis	biological replicate 3
SRR11881550	Tae-0.6-2_F_sRNA-seq	0.6 mm anther	Anther	Fielder	Tae-0.6-2_F_sRNA-seq	USA: St. Louis	biological replicate 2
SRR11881551	Tae-0.6-1_F_sRNA-seq	0.6 mm anther	Anther	Fielder	Tae-0.6-1_F_sRNA-seq	USA: St. Louis	biological replicate 1
SRR11881553	Tae-0.4-4_F_sRNA-seq	0.4 mm anther	Anther	Fielder	Tae-0.4-4_F_sRNA-seq	USA: St. Louis	biological replicate 3
SRR11881554	Tae-0.4-2_F_sRNA-seq	0.4 mm anther	Anther	Fielder	Tae-0.4-2_F_sRNA-seq	USA: St. Louis	biological replicate 2
SRR11881555	Tae-0.4-1_F_sRNA-seq	0.4 mm anther	Anther	Fielder	Tae-0.4-1_F_sRNA-seq	USA: St. Louis	biological replicate 1
SRR11881556	Tae-0.2-3_F_sRNA-seq	0.2 mm anther	Anther	Fielder	Tae-0.2-3_F_sRNA-seq	USA: St. Louis	biological replicate 3
SRR11881557	Tae-0.2-2_F_sRNA-seq	0.2 mm anther	Anther	Fielder	Tae-0.2-2_F_sRNA-seq	USA: St. Louis	biological replicate 2
SRR11881558	Tae-0.2-1_F_sRNA-seq	0.2 mm anther	Anther	Fielder	Tae-0.2-1_F_sRNA-seq	USA: St. Louis	biological replicate 1

Run	Age	Tissue	Cultivar	Sample Name	geo_loc_name	Replicate
SRR11833940	Day 5	microspore	Gobernadora	Day5_rep2	Canada: Quebec	replicate 2
SRR11833941	Day 5	microspore	Gobernadora	Day5_rep.1	Canada: Quebec	replicate 1
SRR11833942	Day 2	microspore	Gobernadora	Day2_rep4	Canada: Quebec	replicate 4
SRR11833943	Day 2	microspore	Gobernadora	Day2_rep3	Canada: Quebec	replicate 3
SRR11833944	Day 2	microspore	Gobernadora	Day2_rep2	Canada: Quebec	replicate 2
SRR11833945	Day 2	microspore	Gobernadora	Day2_rep1	Canada: Quebec	replicate 1
SRR11833946	Day 0	microspore	Gobernadora	Day0_rep4	Canada: Quebec	replicate 4
SRR11833947	Day 0	microspore	Gobernadora	Day0_rep3	Canada: Quebec	replicate 3
SRR11833951	Day 5	microspore	Gobernadora	Day5_rep4	Canada: Quebec	replicate 4
SRR11833952	Day 5	microspore	Gobernadora	Day5_rep3	Canada: Quebec	replicate 3
SRR11833953	Day 0	microspore	Gobernadora	Day0_rep2	Canada: Quebec	replicate 2
SRR11833954	Day 0	microspore	Gobernadora	Day0_rep1	Canada: Quebec	replicate 1

Run	LibrarySelection	Tissue	Cultivar	Sample Name	Replicate
SRR11153177	size fractionation	root	Golden Promise	GSM4333095	rep3
SRR11153176	size fractionation	shoot	Golden Promise	GSM4333094	rep3
SRR11153175	size fractionation	root	Golden Promise	GSM4333093	rep3
SRR11153174	size fractionation	shoot	Golden Promise	GSM4333092	rep3
SRR11153173	size fractionation	root	Golden Promise	GSM4333091	rep2
SRR11153172	size fractionation	shoot	Golden Promise	GSM4333090	rep2
SRR11153171	size fractionation	root	Golden Promise	GSM4333089	rep2
SRR11153170	size fractionation	shoot	Golden Promise	GSM4333088	rep2
SRR11153169	size fractionation	root	Golden Promise	GSM4333087	rep1
SRR11153168	size fractionation	root	Golden Promise	GSM4333086	rep1
SRR11153167	size fractionation	shoot	Golden Promise	GSM4333085	rep1
SRR11153166	size fractionation	shoot	Golden Promise	GSM4333084	rep1

Run	LibrarySelection	Tissue	Sample Name
SRR11098940	size fractionation	root	GSM4318310
SRR11098939	size fractionation	root	GSM4318309
SRR11098938	size fractionation	root	GSM4318308
SRR11098937	size fractionation	root	GSM4318307
SRR11098936	size fractionation	root	GSM4318306
SRR11098935	size fractionation	root	GSM4318305
SRR11098934	size fractionation	shoot	GSM4318304
SRR11098933	size fractionation	shoot	GSM4318303
SRR11098932	size fractionation	shoot	GSM4318302
SRR11098931	size fractionation	shoot	GSM4318301
SRR11098930	size fractionation	shoot	GSM4318300
SRR11098929	size fractionation	shoot	GSM4318299

Run	LibrarySelection	Tissue	Sample Name	Treatment
SRR11098909	size fractionation	root	GSM4318279	low Pi condition
SRR11098908	size fractionation	shoot	GSM4318278	low Pi condition

Run	LibrarySelection	Genotype	Timepoint	Tissue	Sample Name	Replicate
SRR7363414	size fractionation	m19028 (mla6, Rar3, bln1)	48 HAI	Barley infected first leaf (PO:0007094)	GSM3204658	Rep 3
SRR7363413	size fractionation	m19028 (mla6, Rar3, bln1)	48 HAI	Barley infected first leaf (PO:0007094)	GSM3204657	Rep 2
SRR7363412	size fractionation	m19028 (mla6, Rar3, bln1)	48 HAI	Barley infected first leaf (PO:0007094)	GSM3204656	Rep 1
SRR7363411	size fractionation	m19028 (mla6, Rar3, bln1)	32 HAI	Barley infected first leaf (PO:0007094)	GSM3204655	Rep 3
SRR7363410	size fractionation	m19028 (mla6, Rar3, bln1)	32 HAI	Barley infected first leaf (PO:0007094)	GSM3204654	Rep 2
SRR7363409	size fractionation	m19028 (mla6, Rar3, bln1)	32 HAI	Barley infected first leaf (PO:0007094)	GSM3204653	Rep 1
SRR7363408	size fractionation	m19028 (mla6, Rar3, bln1)	24 HAI	Barley infected first leaf (PO:0007094)	GSM3204652	Rep 3
SRR7363407	size fractionation	m19028 (mla6, Rar3, bln1)	24 HAI	Barley infected first leaf (PO:0007094)	GSM3204651	Rep 2
SRR7363406	size fractionation	m19028 (mla6, Rar3, bln1)	24 HAI	Barley infected first leaf (PO:0007094)	GSM3204650	Rep 1
SRR7363405	size fractionation	m19028 (mla6, Rar3, bln1)	20 HAI	Barley infected first leaf (PO:0007094)	GSM3204649	Rep 3
SRR7363404	size fractionation	m19028 (mla6, Rar3, bln1)	20 HAI	Barley infected first leaf (PO:0007094)	GSM3204648	Rep 2
SRR7363403	size fractionation	m19028 (mla6, Rar3, bln1)	20 HAI	Barley infected first leaf (PO:0007094)	GSM3204647	Rep 1
SRR7363402	size fractionation	m19028 (mla6, Rar3, bln1)	16 HAI	Barley infected first leaf (PO:0007094)	GSM3204646	Rep 3
SRR7363401	size fractionation	m19028 (mla6, Rar3, bln1)	16 HAI	Barley infected first leaf (PO:0007094)	GSM3204645	Rep 2
SRR7363400	size fractionation	m19028 (mla6, Rar3, bln1)	16 HAI	Barley infected first leaf (PO:0007094)	GSM3204644	Rep 1
SRR7363399	size fractionation	m19028 (mla6, Rar3, bln1)	0 HAI	Barley infected first leaf (PO:0007094)	GSM3204643	Rep 3
SRR7363398	size fractionation	m19028 (mla6, Rar3, bln1)	0 HAI	Barley infected first leaf (PO:0007094)	GSM3204642	Rep 2
SRR7363397	size fractionation	m19028 (mla6, Rar3, bln1)	0 HAI	Barley infected first leaf (PO:0007094)	GSM3204641	Rep 1
SRR7363396	size fractionation	m19089 (Mla6, Rar3, bln1)	48 HAI	Barley infected first leaf (PO:0007094)	GSM3204640	Rep 3
SRR7363395	size fractionation	m19089 (Mla6, Rar3, bln1)	48 HAI	Barley infected first leaf (PO:0007094)	GSM3204639	Rep 2
SRR7363394	size fractionation	m19089 (Mla6, Rar3, bln1)	48 HAI	Barley infected first leaf (PO:0007094)	GSM3204638	Rep 1
SRR7363393	size fractionation	m19089 (Mla6, Rar3, bln1)	32 HAI	Barley infected first leaf (PO:0007094)	GSM3204637	Rep 3
SRR7363392	size fractionation	m19089 (Mla6, Rar3, bln1)	32 HAI	Barley infected first leaf (PO:0007094)	GSM3204636	Rep 2
SRR7363391	size fractionation	m19089 (Mla6, Rar3, bln1)	32 HAI	Barley infected first leaf (PO:0007094)	GSM3204635	Rep 1
SRR7363390	size fractionation	m19089 (Mla6, Rar3, bln1)	24 HAI	Barley infected first leaf (PO:0007094)	GSM3204634	Rep 3
SRR7363389	size fractionation	m19089 (Mla6, Rar3, bln1)	24 HAI	Barley infected first leaf (PO:0007094)	GSM3204633	Rep 2
SRR7363388	size fractionation	m19089 (Mla6, Rar3, bln1)	24 HAI	Barley infected first leaf (PO:0007094)	GSM3204632	Rep 1
SRR7363387	size fractionation	m19089 (Mla6, Rar3, bln1)	20 HAI	Barley infected first leaf (PO:0007094)	GSM3204631	Rep 3
SRR7363386	size fractionation	m19089 (Mla6, Rar3, bln1)	20 HAI	Barley infected first leaf (PO:0007094)	GSM3204630	Rep 2
SRR7363385	size fractionation	m19089 (Mla6, Rar3, bln1)	20 HAI	Barley infected first leaf (PO:0007094)	GSM3204629	Rep 1
SRR7363384	size fractionation	m19089 (Mla6, Rar3, bln1)	16 HAI	Barley infected first leaf (PO:0007094)	GSM3204628	Rep 3
SRR7363383	size fractionation	m19089 (Mla6, Rar3, bln1)	16 HAI	Barley infected first leaf (PO:0007094)	GSM3204627	Rep 2
SRR7363382	size fractionation	m19089 (Mla6, Rar3, bln1)	16 HAI	Barley infected first leaf (PO:0007094)	GSM3204626	Rep 1
SRR7363381	size fractionation	m19089 (Mla6, Rar3, bln1)	0 HAI	Barley infected first leaf (PO:0007094)	GSM3204625	Rep 3
SRR7363380	size fractionation	m19089 (Mla6, Rar3, bln1)	0 HAI	Barley infected first leaf (PO:0007094)	GSM3204624	Rep 2
SRR7363379	size fractionation	m19089 (Mla6, Rar3, bln1)	0 HAI	Barley infected first leaf (PO:0007094)	GSM3204623	Rep 1
SRR7363378	size fractionation	m11526 (Mla6, rar3, Bln1)	48 HAI	Barley infected first leaf (PO:0007094)	GSM3204622	Rep 3
SRR7363377	size fractionation	m11526 (Mla6, rar3, Bln1)	48 HAI	Barley infected first leaf (PO:0007094)	GSM3204621	Rep 2
SRR7363376	size fractionation	m11526 (Mla6, rar3, Bln1)	48 HAI	Barley infected first leaf (PO:0007094)	GSM3204620	Rep 1
SRR7363375	size fractionation	m11526 (Mla6, rar3, Bln1)	32 HAI	Barley infected first leaf (PO:0007094)	GSM3204619	Rep 3
SRR7363374	size fractionation	m11526 (Mla6, rar3, Bln1)	32 HAI	Barley infected first leaf (PO:0007094)	GSM3204618	Rep 2
SRR7363373	size fractionation	m11526 (Mla6, rar3, Bln1)	32 HAI	Barley infected first leaf (PO:0007094)	GSM3204617	Rep 1
SRR7363372	size fractionation	m11526 (Mla6, rar3, Bln1)	24 HAI	Barley infected first leaf (PO:0007094)	GSM3204616	Rep 3
SRR7363371	size fractionation	m11526 (Mla6, rar3, Bln1)	24 HAI	Barley infected first leaf (PO:0007094)	GSM3204615	Rep 2
SRR7363370	size fractionation	m11526 (Mla6, rar3, Bln1)	24 HAI	Barley infected first leaf (PO:0007094)	GSM3204614	Rep 1
SRR7363369	size fractionation	m11526 (Mla6, rar3, Bln1)	20 HAI	Barley infected first leaf (PO:0007094)	GSM3204613	Rep 3
SRR7363368	size fractionation	m11526 (Mla6, rar3, Bln1)	20 HAI	Barley infected first leaf (PO:0007094)	GSM3204612	Rep 2
SRR7363367	size fractionation	m11526 (Mla6, rar3, Bln1)	20 HAI	Barley infected first leaf (PO:0007094)	GSM3204611	Rep 1
SRR7363366	size fractionation	m11526 (Mla6, rar3, Bln1)	16 HAI	Barley infected first leaf (PO:0007094)	GSM3204610	Rep 3
SRR7363365	size fractionation	m11526 (Mla6, rar3, Bln1)	16 HAI	Barley infected first leaf (PO:0007094)	GSM3204609	Rep 2
SRR7363364	size fractionation	m11526 (Mla6, rar3, Bln1)	16 HAI	Barley infected first leaf (PO:0007094)	GSM3204608	Rep 1
SRR7363363	size fractionation	m11526 (Mla6, rar3, Bln1)	0 HAI	Barley infected first leaf (PO:0007094)	GSM3204607	Rep 3
SRR7363362	size fractionation	m11526 (Mla6, rar3, Bln1)	0 HAI	Barley infected first leaf (PO:0007094)	GSM3204606	Rep 2
SRR7363361	size fractionation	m11526 (Mla6, rar3, Bln1)	0 HAI	Barley infected first leaf (PO:0007094)	GSM3204605	Rep 1
SRR7363360	size fractionation	m18982 (mla6, Rar3, Bln1)	48 HAI	Barley infected first leaf (PO:0007094)	GSM3204604	Rep 3
SRR7363359	size fractionation	m18982 (mla6, Rar3, Bln1)	48 HAI	Barley infected first leaf (PO:0007094)	GSM3204603	Rep 2
SRR7363358	size fractionation	m18982 (mla6, Rar3, Bln1)	48 HAI	Barley infected first leaf (PO:0007094)	GSM3204602	Rep 1
SRR7363357	size fractionation	m18982 (mla6, Rar3, Bln1)	32 HAI	Barley infected first leaf (PO:0007094)	GSM3204601	Rep 3
SRR7363356	size fractionation	m18982 (mla6, Rar3, Bln1)	32 HAI	Barley infected first leaf (PO:0007094)	GSM3204600	Rep 2
SRR7363355	size fractionation	m18982 (mla6, Rar3, Bln1)	32 HAI	Barley infected first leaf (PO:0007094)	GSM3204599	Rep 1
SRR7363354	size fractionation	m18982 (mla6, Rar3, Bln1)	24 HAI	Barley infected first leaf (PO:0007094)	GSM3204598	Rep 3
SRR7363353	size fractionation	m18982 (mla6, Rar3, Bln1)	24 HAI	Barley infected first leaf (PO:0007094)	GSM3204597	Rep 2
SRR7363352	size fractionation	m18982 (mla6, Rar3, Bln1)	24 HAI	Barley infected first leaf (PO:0007094)	GSM3204596	Rep 1
SRR7363351	size fractionation	m18982 (mla6, Rar3, Bln1)	20 HAI	Barley infected first leaf (PO:0007094)	GSM3204595	Rep 3
SRR7363350	size fractionation	m18982 (mla6, Rar3, Bln1)	20 HAI	Barley infected first leaf (PO:0007094)	GSM3204594	Rep 2
SRR7363349	size fractionation	m18982 (mla6, Rar3, Bln1)	20 HAI	Barley infected first leaf (PO:0007094)	GSM3204593	Rep 1
SRR7363348	size fractionation	m18982 (mla6, Rar3, Bln1)	16 HAI	Barley infected first leaf (PO:0007094)	GSM3204592	Rep 3
SRR7363347	size fractionation	m18982 (mla6, Rar3, Bln1)	16 HAI	Barley infected first leaf (PO:0007094)	GSM3204591	Rep 2
SRR7363346	size fractionation	m18982 (mla6, Rar3, Bln1)	16 HAI	Barley infected first leaf (PO:0007094)	GSM3204590	Rep 1
SRR7363345	size fractionation	m18982 (mla6, Rar3, Bln1)	0 HAI	Barley infected first leaf (PO:0007094)	GSM3204589	Rep 3
SRR7363344	size fractionation	m18982 (mla6, Rar3, Bln1)	0 HAI	Barley infected first leaf (PO:0007094)	GSM3204588	Rep 2
SRR7363343	size fractionation	m18982 (mla6, Rar3, Bln1)	0 HAI	Barley infected first leaf (PO:0007094)	GSM3204587	Rep 1
SRR7363342	size fractionation	CI 16151 (Mla6, Rar3, Bln1)	48 HAI	Barley infected first leaf (PO:0007094)	GSM3204586	Rep 3
SRR7363341	size fractionation	CI 16151 (Mla6, Rar3, Bln1)	48 HAI	Barley infected first leaf (PO:0007094)	GSM3204585	Rep 2
SRR7363340	size fractionation	CI 16151 (Mla6, Rar3, Bln1)	48 HAI	Barley infected first leaf (PO:0007094)	GSM3204584	Rep 1
SRR7363339	size fractionation	CI 16151 (Mla6, Rar3, Bln1)	32 HAI	Barley infected first leaf (PO:0007094)	GSM3204583	Rep 3
SRR7363338	size fractionation	CI 16151 (Mla6, Rar3, Bln1)	32 HAI	Barley infected first leaf (PO:0007094)	GSM3204582	Rep 2
SRR7363337	size fractionation	CI 16151 (Mla6, Rar3, Bln1)	32 HAI	Barley infected first leaf (PO:0007094)	GSM3204581	Rep 1
SRR7363336	size fractionation	CI 16151 (Mla6, Rar3, Bln1)	24 HAI	Barley infected first leaf (PO:0007094)	GSM3204580	Rep 3
SRR7363335	size fractionation	CI 16151 (Mla6, Rar3, Bln1)	24 HAI	Barley infected first leaf (PO:0007094)	GSM3204579	Rep 2
SRR7363334	size fractionation	CI 16151 (Mla6, Rar3, Bln1)	24 HAI	Barley infected first leaf (PO:0007094)	GSM3204578	Rep 1
SRR7363333	size fractionation	CI 16151 (Mla6, Rar3, Bln1)	20 HAI	Barley infected first leaf (PO:0007094)	GSM3204577	Rep 3
SRR7363332	size fractionation	CI 16151 (Mla6, Rar3, Bln1)	20 HAI	Barley infected first leaf (PO:0007094)	GSM3204576	Rep 2
SRR7363331	size fractionation	CI 16151 (Mla6, Rar3, Bln1)	20 HAI	Barley infected first leaf (PO:0007094)	GSM3204575	Rep 1
SRR7363330	size fractionation	CI 16151 (Mla6, Rar3, Bln1)	16 HAI	Barley infected first leaf (PO:0007094)	GSM3204574	Rep 3
SRR7363329	size fractionation	CI 16151 (Mla6, Rar3, Bln1)	16 HAI	Barley infected first leaf (PO:0007094)	GSM3204573	Rep 2
SRR7363328	size fractionation	CI 16151 (Mla6, Rar3, Bln1)	16 HAI	Barley infected first leaf (PO:0007094)	GSM3204572	Rep 1
SRR7363327	size fractionation	CI 16151 (Mla6, Rar3, Bln1)	0 HAI	Barley infected first leaf (PO:0007094)	GSM3204571	Rep 3
SRR7363326	size fractionation	CI 16151 (Mla6, Rar3, Bln1)	0 HAI	Barley infected first leaf (PO:0007094)	GSM3204570	Rep 2
SRR7363325	size fractionation	CI 16151 (Mla6, Rar3, Bln1)	0 HAI	Barley infected first leaf (PO:0007094)	GSM3204569	Rep 1

Run	Library Name	LibrarySelection	Age	Tissue	Cultivar	Sample Name	geo_loc_name
SRR8698934	s2-2	size fractionation	flag leaf	whole plant	Rolap	sRNA-drought	Poland
SRR8698935	s2-3	size fractionation	flag leaf	whole plant	Rolap	sRNA-drought	Poland
SRR8698936	spike-3	size fractionation	68 days	spike	Rolap	sRNA-spike	Poland
SRR8698937	s2-1	size fractionation	flag leaf	whole plant	Rolap	sRNA-drought	Poland
SRR8698938	spike-1	size fractionation	68 days	spike	Rolap	sRNA-spike	Poland
SRR8698939	spike-2	size fractionation	68 days	spike	Rolap	sRNA-spike	Poland
SRR8698940	6w-2	size fractionation	6 weeks	whole plant	Rolap	sRNA-6w	Poland
SRR8698941	6w-3	size fractionation	6 weeks	whole plant	Rolap	sRNA-6w	Poland
SRR8698942	k5-1	size fractionation	flag leaf	whole plant	Rolap	sRNA-drought	Poland
SRR8698943	k5-2	size fractionation	flag leaf	whole plant	Rolap	sRNA-drought	Poland
SRR8698944	k5-3	size fractionation	flag leaf	whole plant	Rolap	sRNA-drought	Poland
SRR8698945	as	size fractionation	flag leaf	whole plant	Rolap	pare-drough	Poland
SRR8698946	ak	size fractionation	flag leaf	whole plant	Rolap	pare-drough	Poland
SRR8698947	hk	size fractionation	missing	spike	Rolap	pare-spike	Poland
SRR8698948	k2-1	size fractionation	flag leaf	whole plant	Rolap	sRNA-drought	Poland
SRR8698949	k2-2	size fractionation	flag leaf	whole plant	Rolap	sRNA-drought	Poland
SRR8698950	3w-3	size fractionation	3 weeks	whole plant	Rolap	sRNA-3w	Poland
SRR8698951	6w-1	size fractionation	6 weeks	whole plant	Rolap	sRNA-6w	Poland
SRR8698952	3w-1	size fractionation	3 weeks	whole plant	Rolap	sRNA-3w	Poland
SRR8698953	3w-2	size fractionation	3 weeks	whole plant	Rolap	sRNA-3w	Poland
SRR8698954	2w-2	size fractionation	2 weeks	whole plant	Rolap	sRNA-2w	Poland
SRR8698955	2w-3	size fractionation	2 weeks	whole plant	Rolap	sRNA-2w	Poland
SRR8698956	1w-3	size fractionation	1 week	whole plant	Rolap	sRNA-1w	Poland
SRR8698957	2w-1	size fractionation	2 weeks	whole plant	Rolap	sRNA-2w	Poland
SRR8698958	1w-1	size fractionation	1 week	whole plant	Rolap	sRNA-1w	Poland
SRR8698959	1w-2	size fractionation	1 week	whole plant	Rolap	sRNA-1w	Poland
SRR8698960	s5-3	size fractionation	flag leaf	whole plant	Rolap	sRNA-drought	Poland
SRR8698961	s5-2	size fractionation	flag leaf	whole plant	Rolap	sRNA-drought	Poland
SRR8698962	s5-1	size fractionation	flag leaf	whole plant	Rolap	sRNA-drought	Poland
SRR8698963	k3-3	size fractionation	flag leaf	whole plant	Rolap	sRNA-drought	Poland
SRR8698964	k3-2	size fractionation	flag leaf	whole plant	Rolap	sRNA-drought	Poland
SRR8698965	k3-1	size fractionation	flag leaf	whole plant	Rolap	sRNA-drought	Poland
SRR8698966	s3-3	size fractionation	flag leaf	whole plant	Rolap	sRNA-drought	Poland
SRR8698967	s3-2	size fractionation	flag leaf	whole plant	Rolap	sRNA-drought	Poland
SRR8698968	s3-1	size fractionation	flag leaf	whole plant	Rolap	sRNA-drought	Poland
SRR8698969	k2-3	size fractionation	flag leaf	whole plant	Rolap	sRNA-drought	Poland

Run	Library Name	LibrarySelection	Age	Tissue	Cultivar	Sample Name	Replicate
SRR7687211	Root_WB-1_Cd1	cDNA	22 days	root	WB-1	Root_C_Cd1	WB-1_Cd_root_replication 1
SRR7687212	Root_WB-1_Cd2	cDNA	22 days	root	WB-1	Root_C_Cd2	WB-1_Cd_root_replication 2
SRR7687213	Root_GP_Cd1	cDNA	22 days	root	Golden Promise	Root_A_Cd1	GP_Cd_root_replication 1
SRR7687214	Root_GP_Cd2	cDNA	22 days	root	Golden Promise	Root_A_Cd2	GP_Cd_root_replication 2
SRR7687215	Root_WB-1_CK1	cDNA	22 days	root	WB-1	Root_C_CK1	WB-1_CK_root_replication 1
SRR7687216	Root_WB-1_CK2	cDNA	22 days	root	WB-1	Root_C_CK2	WB-1_CK_root_replication 2
SRR7687217	Root_GP_CK1	cDNA	22 days	root	Golden Promise	Root_A_CK1	GP_CK_root_replication 1
SRR7687218	Root_GP_CK2	cDNA	22 days	root	Golden Promise	Root_A_CK2	GP_CK_root_replication 2
SRR7687219	Shoot_WB-1_Cd1	cDNA	22 days	shoot	WB-1	Shoot_C_Cd1	WB-1_Cd_shoot_replication 1
SRR7687220	Shoot_WB-1_Cd2	cDNA	22 days	shoot	WB-1	Shoot_C_Cd2	WB-1_Cd_shoot_replication 2
SRR7687221	Shoot_GP_Cd1	cDNA	22 days	shoot	Golden Promise	Shoot_A_Cd1	GP_Cd_shoot_replication 1
SRR7687222	Shoot_GP_Cd2	cDNA	22 days	shoot	Golden Promise	Shoot_A_Cd2	GP_Cd_shoot_replication 2
SRR7687223	Shoot_WB-1_CK1	cDNA	22 days	shoot	WB-1	Shoot_C_CK1	WB-1_CK_shoot_replication 1
SRR7687224	Shoot_WB-1_CK2	cDNA	22 days	shoot	WB-1	Shoot_C_CK2	WB-1_CK_shoot_replication 2
SRR7687225	Shoot_GP_CK1	cDNA	22 days	shoot	Golden Promise	Shoot_A_CK1	GP_CK_shoot_replication 1
SRR7687226	Shoot_GP_CK2	cDNA	22 days	shoot	Golden Promise	Shoot_A_CK2	GP_CK_shoot_replication 2

Run	Library Name	LibrarySelection	Ecotype	Age	Tissue	Cultivar	Sample Name	Replicate
SRR7543962	XZ29-Al1	cDNA	AI tolerant	20 days	root	-	XZ29-Al1	XZ29 Al replicate 1
SRR7543963	XZ29-Al2	cDNA	AI tolerant	20 days	root	-	XZ29-Al2	XZ29 Al replicate 2
SRR7543964	XZ29 control1	cDNA	AI tolerant	20 days	root	-	XZ29 control1	XZ29 control replicate 1
SRR7543965	XZ29 control2	cDNA	AI tolerant	20 days	root	-	XZ29 control2	XZ29 control replicate 2
SRR7543966	Golden Promise-Al1	cDNA	AI sensitive	20 days	root	Golden Promise	Golden Promise-Al1	GP Al replicate 1
SRR7543967	Golden Promise-Al2	cDNA	AI sensitive	20 days	root	Golden Promise	Golden Promise-Al2	GP Al replicate 2
SRR7543968	Golden Promise control1	cDNA	AI sensitive	20 days	root	Golden Promise	Golden Promise control1	GP control replicate 1
SRR7543969	Golden Promise control2	cDNA	AI sensitive	20 days	root	Golden Promise	Golden Promise control2	GP control replicate 2

Run	Library Name	LibrarySelection	Cultivar	Sample Name	geo_loc_name
DRR107734	Barley Small RNA	size fractionation	Morex	DRS051843	Japan:Tsukuba

Run	Library Name	LibrarySelection	Stage	Tissue	Cultivar	Sample Name	geo_loc_name
SRR5643510	sRNA-seq_embryo-10DPA	size fractionation	Embryo, ten days post anthesis	Embryo	Golden Promise	Embryo-10DPA	China
SRR5643511	sRNA-seq_seed-5DAG	size fractionation	Seeds, five days after germination	Seeds	Golden Promise	Seed-5DAG	China
SRR5643512	sRNA-seq_seed-1DAG	size fractionation	Seeds, one day after germination	Seeds	Golden Promise	Seed-1DAG	China

Run	Library Name	LibrarySelection	stage	Tissue	Cultivar	Sample Name	geo_loc_name	Replicate
SRR5054866	SUB2126437	size fractionation	8 Days Post Anthesis	grain	Cliper	sRNA_seq_grain_8_DPA_replicate2	China:Northwest A&F University,Yangling, Shaanxi	replicate2
SRR5054862	SUB2126440	size fractionation	18 Days Post Anthesis	grain	Cliper	sRNA_seq_grain_18_DPA_replicate1	China:Northwest A&F University,Yangling, Shaanxi	replicate1
SRR5054861	SUB2126433	size fractionation	3 Days Post Anthesis	grain	Cliper	sRNA_seq_grain_3_DPA_replicate1	China:Northwest A&F University,Yangling, Shaanxi	replicate1
SRR5054860	SUB2126441	size fractionation	18 Days Post Anthesis	grain	Cliper	sRNA_seq_grain_18_DPA_replicate2	China:Northwest A&F University,Yangling, Shaanxi	replicate2
SRR5054859	SUB2126436	size fractionation	8 Days Post Anthesis	grain	Cliper	sRNA_seq_grain_8_DPA_replicate1	China:Northwest A&F University,Yangling, Shaanxi	replicate1
SRR5054858	SUB2126439	size fractionation	13 Days Post Anthesis	grain	Cliper	sRNA_seq_grain_13_DPA_replicate2	China:Northwest A&F University,Yangling, Shaanxi	replicate2
SRR5054853	SUB2126438	size fractionation	13 Days Post Anthesis	grain	Cliper	sRNA_seq_grain_13_DPA_replicate1	China:Northwest A&F University,Yangling, Shaanxi	replicate1
SRR5054852	SUB2126435	size fractionation	3 Days Post Anthesis	grain	Cliper	sRNA_seq_grain_3_DPA_replicate2	China:Northwest A&F University,Yangling, Shaanxi	replicate2

Run	Library Name	LibrarySelection	Stage	Tissue	Cultivar	Sample Name	geo_loc_name	Treatment
SRR2481856	barley_8h_t	size fractionation	seedling	all plant	Morex	barley_8h_t	China	salinity stress
SRR2481855	barley_8h_ck	size fractionation	seedling	all plant	Morex	barley_8h_ck	China	control
SRR2481854	barley_3h_t	size fractionation	seedling	all plant	Morex	barley_3h_t	China	salinity stress
SRR2481853	barley_3h_ck	size fractionation	seedling	all plant	Morex	barley_3h_ck	China	control
SRR2481852	barley_27h_t	size fractionation	seedling	all plant	Morex	barley_27h_t	China	salinity stress
SRR2481851	barley_sRNA barley_27h_ck	size fractionation	seedling	all plant	Morex	barley_27h_ck	China	control

Run	LibrarySelection	Library Name	Age	Tissue	Cultivar	Sample Name	geo_loc_name	Replicate
SRR24282674	size fractionation	I-02	14 days	whole leaf	McNair 701	Infected_02	USA: Pullman	rep2
SRR24282675	size fractionation	I-01	14 days	whole leaf	McNair 701	Infected_01	USA: Pullman	rep1
SRR24282676	size fractionation	U-03	14 days	whole leaf	McNair 701	Uninfected_03	USA: Pullman	rep3
SRR24282677	size fractionation	U-02	14 days	whole leaf	McNair 701	Uninfected_02	USA: Pullman	rep2
SRR24282678	size fractionation	U-01	14 days	whole leaf	McNair 701	Uninfected_01	USA: Pullman	rep1

Run	LibrarySelection	Library Name	Ecotype	Stage	Tissue	Cultivar	Sample Name	geo_loc_name
SRR23262625	cDNA	TaSRoot	Turkey	Tillering	Root	Yuregir-89	TaSRoot	Turkey: Kastamonu
SRR23262626	cDNA	TaCRoot	Turkey	Tillering	Root	Yuregir-89	TaCRoot	Turkey: Kastamonu
SRR23262629	cDNA	TaSLeaf	Turkey	Tillering	Leaf	Yuregir-89	TaSLeaf	Turkey: Kastamonu
SRR23262630	cDNA	TaCLeaf	Turkey	Tillering	Leaf	Yuregir-89	TaCLeaf	Turkey: Kastamonu
SRR23262621	cDNA	TtSRoot	Turkey	Tillering	Root	Kiziltan-91	TtSRoot	Turkey: Kastamonu
SRR23262622	cDNA	TtCRoot	Turkey	Tillering	Root	Kiziltan-91	TtCRoot	Turkey: Kastamonu
SRR23262623	cDNA	TtSLeaf	Turkey	Tillering	Leaf	Kiziltan-91	TtSLeaf	Turkey: Kastamonu
SRR23262624	cDNA	TtCLeaf	Turkey	Tillering	Leaf	Kiziltan-91	TtCLeaf	Turkey: Kastamonu
SRR23262619	cDNA	TmSLeaf	Turkey	Tillering	Leaf	Siyez	TmSLeaf	Turkey: Kastamonu
SRR23262620	cDNA	TmCLeaf	Turkey	Tillering	Leaf	Siyez	TmCLeaf	Turkey: Kastamonu
SRR23262627	cDNA	TmSRoot	Turkey	Tillering	Root	Siyez	TmSRoot	Turkey: Kastamonu
SRR23262628	cDNA	TmCRoot	Turkey	Tillering	Root	Siyez	TmCRoot	Turkey: Kastamonu

Run	LibrarySelection	Library Name	Ecotype	Age	Tissue	Cultivar	Sample Name	geo_loc_name	Treatment
SRR22989766	PCR	(-Fe) SHOOT	NABI MOHALI	2 weeks	SHOOT	C306	(-Fe) SHOOT	India	Fe Deficient
SRR22989767	PCR	(+Fe) SHOOT	NABI MOHALI	2 weeks	SHOOT	C306	(+Fe) SHOOT	India	Fe sufficient
SRR22989768	PCR	(-Fe) ROOT	NABI MOHALI	2 weeks	ROOT	C306	(-Fe) ROOT	India	Fe Deficient
SRR22989769	PCR	(+Fe) ROOT	NABI MOHALI	2 weeks	ROOT	C306	(+Fe) ROOT	India	Fe sufficient

Run	LibrarySelection	Library Name	Stage	Tissue	Cultivar	Sample Name	Treatment
SRR22103146	RT-PCR	Wheat_L263_S10	35DPA	developing seeds	Waitoubai	Wheat_L263_10	Normal temperature
SRR22103147	RT-PCR	Wheat_L263_S09	28DPA	developing seeds	Waitoubai	Wheat_L263_09	High temperature
SRR22103148	RT-PCR	Wheat_L263_S08	28DPA	developing seeds	Waitoubai	Wheat_L263_08	High temperature
SRR22103149	RT-PCR	Wheat_L263_S07	28DPA	developing seeds	Waitoubai	Wheat_L263_07	High temperature
SRR22103150	RT-PCR	Wheat_L263_S06	28DPA	developing seeds	Waitoubai	Wheat_L263_06	Normal temperature
SRR22103151	RT-PCR	Wheat_L263_S05	28DPA	developing seeds	Waitoubai	Wheat_L263_05	Normal temperature
SRR22103152	RT-PCR	Wheat_L263_S04	28DPA	developing seeds	Waitoubai	Wheat_L263_04	Normal temperature
SRR22103163	RT-PCR	Wheat_L263_S03	21DPA	developing seeds	Waitoubai	Wheat_L263_03	Normal temperature
SRR22103169	RT-PCR	Wheat_L263_S15	35DPA	developing seeds	Waitoubai	Wheat_L263_15	High temperature
SRR22103170	RT-PCR	Wheat_L263_S14	35DPA	developing seeds	Waitoubai	Wheat_L263_14	High temperature
SRR22103171	RT-PCR	Wheat_L263_S13	35DPA	developing seeds	Waitoubai	Wheat_L263_13	High temperature
SRR22103172	RT-PCR	Wheat_L263_S12	35DPA	developing seeds	Waitoubai	Wheat_L263_12	Normal temperature
SRR22103173	RT-PCR	Wheat_L263_S11	35DPA	developing seeds	Waitoubai	Wheat_L263_11	Normal temperature
SRR22103174	RT-PCR	Wheat_L263_S02	21DPA	developing seeds	Waitoubai	Wheat_L263_02	Normal temperature
SRR22103175	RT-PCR	Wheat_L263_S01	21DPA	developing seeds	Waitoubai	Wheat_L263_01	Normal temperature

Run	LibrarySelection	Library Name	Ecotype	Age	Tissue	Cultivar	Sample Name	geo_loc_name
SRR21439292	Oligo-dT	DAC10_2	korea	3 months	Spikelet	Keumgang	RNA under heat stress	South Korea: Seoul
SRR21439293	Oligo-dT	DAC10_1	korea	3 months	Spikelet	Keumgang	RNA under heat stress	South Korea: Seoul
SRR21439294	Oligo-dT	DAT10_1	korea	3 months	Spikelet	Keumgang	RNA under heat stress	South Korea: Seoul
SRR21439295	Oligo-dT	DAC6_1	korea	3 months	Spikelet	Keumgang	RNA under heat stress	South Korea: Seoul
SRR21439296	Oligo-dT	DAT6_1	korea	3 months	Spikelet	Keumgang	RNA under heat stress	South Korea: Seoul

Run	LibrarySelection	Library Name	Stage	Tissue	Cultivar	Sample Name	geo_loc_name	Replicate
SRR21050554	other	smallTFL-1-1	heading date	ovary	Dong xuan 3	smallTFL-1-1	China	replicate=biological replicate 10
SRR21050555	other	smallCK-3-3	heading date	ovary	Dong xuan 3	smallCK-3-3	China	replicate=biological replicate 9
SRR21050556	other	smallCK-3-2	heading date	ovary	Dong xuan 3	smallCK-3-2	China	replicate=biological replicate 8
SRR21050557	other	smallCK-3-1	heading date	ovary	Dong xuan 3	smallCK-3-1	China	replicate=biological replicate 7
SRR21050558	other	smallCK-2-3	heading date	ovary	Dong xuan 3	smallCK-2-3	China	replicate=biological replicate 6
SRR21050559	other	smallCK-2-2	heading date	ovary	Dong xuan 3	smallCK-2-2	China	replicate=biological replicate 5
SRR21050560	other	smallCK-2-1	heading date	ovary	Dong xuan 3	smallCK-2-1	China	replicate=biological replicate 4
SRR21050561	other	smallCK-1-3	heading date	ovary	Dong xuan 3	smallCK-1-3	China	replicate=biological replicate 3
SRR21050562	other	smallTFL-3-3	heading date	ovary	Dong xuan 3	smallTFL-3-3	China	replicate=biological replicate 18
SRR21050563	other	smallTFL-3-2	heading date	ovary	Dong xuan 3	smallTFL-3-2	China	replicate=biological replicate 17
SRR21050564	other	smallTFL-3-1	heading date	ovary	Dong xuan 3	smallTFL-3-1	China	replicate=biological replicate 16
SRR21050565	other	smallTFL-2-3	heading date	ovary	Dong xuan 3	smallTFL-2-3	China	replicate=biological replicate 15
SRR21050566	other	smallTFL-2-2	heading date	ovary	Dong xuan 3	smallTFL-2-2	China	replicate=biological replicate 14
SRR21050567	other	smallTFL-2-1	heading date	ovary	Dong xuan 3	smallTFL-2-1	China	replicate=biological replicate 13
SRR21050568	other	smallTFL-1-3	heading date	ovary	Dong xuan 3	smallTFL-1-3	China	replicate=biological replicate 12
SRR21050569	other	smallTFL-1-2	heading date	ovary	Dong xuan 3	smallTFL-1-2	China	replicate=biological replicate 11
SRR21050570	other	smallCK-1-2	heading date	ovary	Dong xuan 3	smallCK-1-2	China	replicate=biological replicate 2
SRR21050571	other	smallCK-1-1	heading date	ovary	Dong xuan 3	smallCK-1-1	China	replicate=biological replicate 1

Run	LibrarySelection	Library Name	Stage	Tissue	Cultivar	Sample Name	Treatment
DRR299372	cDNA	Leaf rust Susceptible- Mock inoculation	Two-leaf stage	leaf	HD2329	LSM	pathogen Infection
DRR299371	cDNA	Stem rust resistant- Infection treatment	Two-leaf stage	leaf	HD2329+Sr36	SRI	Mock
DRR299374	cDNA	Leaf rust Resistant- Mock inoculation	Two-leaf stage	leaf	HD2329 +Lr45	SAMD00325718	Mock
DRR299373	cDNA	Leaf rust Susceptible- Infection treated	Two-leaf stage	leaf	HD2329	SAMD00325717	pathogen Infection
DRR299375	cDNA	Leaf rust Resistant-Infection treated	Two-leaf stage	leaf	HD2329+Lr45	SAMD00325719	pathogen Infection
DRR299370	cDNA	Stem rust Resistant- Mock inoculation	Two-leaf stage	leaf	HD2329 +Sr36	SAMD00325714	Mock
DRR299369	cDNA	Stem rust susceptible- Infection treatment	Two-leaf stage	leaf	HD2329	SAMD00325713	pathogen Infection
DRR299368	cDNA	Stem rust susceptible- Mock inoculation	Two-leaf stage	leaf	HD2329	SAMD00325712	Mock

Run	Library Name	Age	Tissue	Cultivar	Sample Name	geo_loc_name	Treatment	Replicate
SRR2094581	Infected Louise 3	42 days	flag leaf	Louise	Infected Louise	USA: Washington	inoculated with urediospores plus talcum powder	-
SRR2094580	Infected Louise 2	42 days	flag leaf	Louise	Infected Louise	USA: Washington	inoculated with urediospores plus talcum powder	-
SRR2094579	Infected Louise 1	42 days	flag leaf	Louise	Infected Louise	USA: Washington	inoculated with urediospores plus talcum powder	-
SRR2094591	Uninfected Louise 3	42 days	flag leaf	Louise	Uninfected Louise	USA: Washington	mock inoculated with talcum powder	-
SRR2094590	Uninfected Louise 2	42 days	flag leaf	Louise	Uninfected Louise	USA: Washington	mock inoculated with talcum powder	-
SRR2094588	Uninfected Louise 1	42 days	flag leaf	Louise	Uninfected Louise	USA: Washington	mock inoculated with talcum powder	-
SRR2094566	Infected Penawawa 3	42 days	flag leaf	Penawawa	Infected Penawawa	USA: Washington	inoculated with urediospores plus talcum powder	-
SRR2094565	Infected Penawawa 2	42 days	flag leaf	Penawawa	Infected Penawawa	USA: Washington	inoculated with urediospores plus talcum powder	-
SRR2094492	Infected Penawawa 1	42 days	flag leaf	Penawawa	Infected Penawawa	USA: Washington	inoculated with urediospores plus talcum powder	-
SRR2094586	Uninfected Penawawa 3	42 days	flag leaf	Penawawa	Uninfected Penawawa	USA: Washington	mock inoculated with talcum powder	-
SRR2094585	Uninfected Penawawa 2	42 days	flag leaf	Penawawa	Uninfected Penawawa	USA: Washington	mock inoculated with talcum powder	-
SRR2094584	Uninfected Penawawa 1	42 days	flag leaf	Penawawa	Uninfected Penawawa	USA: Washington	mock inoculated with talcum powder	-
SRR19441421	I4_AvS_Pst78_sRNA	22 days	whole shoot	Avocet Susceptible	I4_AvS_Pst78_18	USA: Washington	2 week old plants inoculated with Pst78 spores; dew chamber 24h; incubated 7 days 15C day/15C night	Infected 4
SRR19441422	I3_AvS_Pst78_sRNA	22 days	whole shoot	Avocet Susceptible	I3_AvS_Pst78_18	USA: Washington	2 week old plants inoculated with Pst78 spores; dew chamber 24h; incubated 7 days 15C day/15C night	Infected 3
SRR19441423	I2_AvS_Pst78_sRNA	22 days	whole shoot	Avocet Susceptible	I2_AvS_Pst78_18	USA: Washington	2 week old plants inoculated with Pst78 spores; dew chamber 24h; incubated 7 days 15C day/15C night	Infected 2
SRR19441424	I1_AvS_Pst78_sRNA	22 days	whole shoot	Avocet Susceptible	I1_AvS_Pst78_18	USA: Washington	2 week old plants inoculated with Pst78 spores; dew chamber 24h; incubated 7 days 15C day/15C night	Infected 1
SRR19441425	U4_AvS_sRNA	22 days	whole shoot	Avocet Susceptible	U4_AvS_18	USA: Washington	2 week old plants mock-inoculated with talc; dew chamber 24h; incubated 7 days 15C day/15C night	Uninfected 4
SRR19441426	U3_AvS_sRNA	22 days	whole shoot	Avocet Susceptible	U3_AvS_18	USA: Washington	2 week old plants mock-inoculated with talc; dew chamber 24h; incubated 7 days 15C day/15C night	Uninfected 3
SRR19441427	U2_AvS_sRNA	22 days	whole shoot	Avocet Susceptible	U2_AvS_18	USA: Washington	2 week old plants mock-inoculated with talc; dew chamber 24h; incubated 7 days 15C day/15C night	Uninfected 2
SRR19441428	U1_AvS_sRNA	22 days	whole shoot	Avocet Susceptible	U1_AvS_18	USA: Washington	2 week old plants mock-inoculated with talc; dew chamber 24h; incubated 7 days 15C day/15C night	Uninfected 1

Run	LibrarySelection	Library Name	Stage	Tissue	Cultivar	Sample Name	geo_loc_name	Treatment	Replicate
SRR19238050	size fractionation	DT-T-1	seedling stage	root	ZM13	DT-T-1	China:jinzhong	drought	biological replicate 1
SRR19238051	size fractionation	DT-CK-3	seedling stage	root	ZM13	DT-CK-3	China:jinzhong	normal	biological replicate 3
SRR19238052	size fractionation	DT-CK-2	seedling stage	root	ZM13	DT-CK-2	China:jinzhong	normal	biological replicate 2
SRR19238053	size fractionation	DT-CK-1	seedling stage	root	ZM13	DT-CK-1	China:jinzhong	normal	biological replicate 1
SRR19238054	size fractionation	DS-T-3	seedling stage	root	JM38	DS-T-3	China:jinzhong	drought	biological replicate 3
SRR19238055	size fractionation	DS-T-2	seedling stage	root	JM38	DS-T-2	China:jinzhong	drought	biological replicate 2
SRR19238056	size fractionation	DS-T-1	seedling stage	root	JM38	DS-T-1	China:jinzhong	drought	biological replicate 1
SRR19238057	size fractionation	DS-CK-3	seedling stage	root	JM38	DS-CK-3	China:jinzhong	normal	biological replicate 3
SRR19238058	size fractionation	DT-T-3	seedling stage	root	ZM13	DT-T-3	China:jinzhong	drought	biological replicate 3
SRR19238059	size fractionation	DT-T-2	seedling stage	root	ZM13	DT-T-2	China:jinzhong	drought	biological replicate 2
SRR19238060	size fractionation	DS-CK-2	seedling stage	root	JM38	DS-CK-2	China:jinzhong	normal	biological replicate 2
SRR19238061	size fractionation	DS-CK-1	seedling stage	root	JM38	DS-CK-1	China:jinzhong	normal	biological replicate 1

Run	LibrarySelection	Library Name	Stage	Tissue	Sample Name	geo_loc_name
SRR17712120	PCR	CG_6h_1	Trileaf stage	Whole seedlings	CG_6h_1	China:shannxi
SRR17712121	PCR	CG_1h_3	Trileaf stage	Whole seedlings	CG_1h_3	China:shannxi
SRR17712122	PCR	CG_1h_2	Trileaf stage	Whole seedlings	CG_1h_2	China:shannxi
SRR17712123	PCR	CG_1h_1	Trileaf stage	Whole seedlings	CG_1h_1	China:shannxi
SRR17712124	PCR	CG_12h_3	Trileaf stage	Whole seedlings	CG_12h_3	China:shannxi
SRR17712125	PCR	CG_12h_2	Trileaf stage	Whole seedlings	CG_12h_2	China:shannxi
SRR17712126	PCR	DD_6h_3	Trileaf stage	Whole seedlings	DD_6h_3	China:shannxi
SRR17712127	PCR	DD_6h_2	Trileaf stage	Whole seedlings	DD_6h_2	China:shannxi
SRR17712128	PCR	DD_6h_1	Trileaf stage	Whole seedlings	DD_6h_1	China:shannxi
SRR17712129	PCR	DD_1h_3	Trileaf stage	Whole seedlings	DD_1h_3	China:shannxi
SRR17712130	PCR	DD_1h_2	Trileaf stage	Whole seedlings	DD_1h_2	China:shannxi
SRR17712131	PCR	DD_1h_1	Trileaf stage	Whole seedlings	DD_1h_1	China:shannxi
SRR17712132	PCR	CG_12h_1	Trileaf stage	Whole seedlings	CG_12h_1	China:shannxi
SRR17712133	PCR	DD_12h_3	Trileaf stage	Whole seedlings	DD_12h_3	China:shannxi
SRR17712134	PCR	DD_12h_2	Trileaf stage	Whole seedlings	DD_12h_2	China:shannxi
SRR17712135	PCR	DD_12h_1	Trileaf stage	Whole seedlings	DD_12h_1	China:shannxi
SRR17712136	PCR	DD_0h_3	Trileaf stage	Whole seedlings	DD_0h_3	China:shannxi
SRR17712137	PCR	DD_0h_2	Trileaf stage	Whole seedlings	DD_0h_2	China:shannxi
SRR17712138	PCR	DD_0h_1	Trileaf stage	Whole seedlings	DD_0h_1	China:shannxi
SRR17712139	PCR	DM_6h_3	Trileaf stage	Whole seedlings	DM_6h_3	China:shannxi
SRR17712140	PCR	DM_6h_2	Trileaf stage	Whole seedlings	DM_6h_2	China:shannxi
SRR17712141	PCR	DM_6h_1	Trileaf stage	Whole seedlings	DM_6h_1	China:shannxi
SRR17712142	PCR	DM_1h_3	Trileaf stage	Whole seedlings	DM_1h_3	China:shannxi
SRR17712143	PCR	CG_0h_3	Trileaf stage	Whole seedlings	CG_0h_3	China:shannxi
SRR17712144	PCR	DM_1h_2	Trileaf stage	Whole seedlings	DM_1h_2	China:shannxi
SRR17712145	PCR	DM_1h_1	Trileaf stage	Whole seedlings	DM_1h_1	China:shannxi
SRR17712146	PCR	DM_12h_3	Trileaf stage	Whole seedlings	DM_12h_3	China:shannxi
SRR17712147	PCR	DM_12h_2	Trileaf stage	Whole seedlings	DM_12h_2	China:shannxi
SRR17712148	PCR	DM_12h_1	Trileaf stage	Whole seedlings	DM_12h_1	China:shannxi
SRR17712149	PCR	DM_0h_3	Trileaf stage	Whole seedlings	DM_0h_3	China:shannxi
SRR17712150	PCR	DM_0h_2	Trileaf stage	Whole seedlings	DM_0h_2	China:shannxi
SRR17712151	PCR	DM_0h_1	Trileaf stage	Whole seedlings	DM_0h_1	China:shannxi
SRR17712152	PCR	CG_6h_3	Trileaf stage	Whole seedlings	CG_6h_3	China:shannxi
SRR17712153	PCR	CG_6h_2	Trileaf stage	Whole seedlings	CG_6h_2	China:shannxi
SRR17712154	PCR	CG_0h_2	Trileaf stage	Whole seedlings	CG_0h_2	China:shannxi
SRR17712155	PCR	CG_0h_1	Trileaf stage	Whole seedlings	CG_0h_1	China:shannxi

Run	LibrarySelection	Library Name	Tissue	Cultivar	Sample Name	Treatment	Replicate
SRR17316475	size fractionation	GSM5750485	leaves	Akteur	GSM5750485	Non inoculated	rep4
SRR17316476	size fractionation	GSM5750484	leaves	Akteur	GSM5750484	Non inoculated	rep3
SRR17316477	size fractionation	GSM5750483	leaves	Akteur	GSM5750483	Non inoculated	rep2
SRR17316478	size fractionation	GSM5750482	leaves	Akteur	GSM5750482	Non inoculated	rep1
SRR17316479	size fractionation	GSM5750481	leaves	Akteur	GSM5750481	Non inoculated	rep4
SRR17316480	size fractionation	GSM5750480	leaves	Akteur	GSM5750480	Non inoculated	rep3
SRR17316481	size fractionation	GSM5750479	leaves	Akteur	GSM5750479	Non inoculated	rep2
SRR17316482	size fractionation	GSM5750478	leaves	Akteur	GSM5750478	Non inoculated	rep1
SRR17316483	size fractionation	GSM5750477	leaves	Akteur	GSM5750477	WDV infected	rep4
SRR17316484	size fractionation	GSM5750476	leaves	Akteur	GSM5750476	WDV infected	rep3
SRR17316485	size fractionation	GSM5750475	leaves	Akteur	GSM5750475	WDV infected	rep2
SRR17316486	size fractionation	GSM5750474	leaves	Akteur	GSM5750474	WDV infected	rep1
SRR17316487	size fractionation	GSM5750473	leaves	Akteur	GSM5750473	WDV infected	rep4
SRR17316488	size fractionation	GSM5750472	leaves	Akteur	GSM5750472	WDV infected	rep3
SRR17316489	size fractionation	GSM5750471	leaves	Akteur	GSM5750471	WDV infected	rep2
SRR17316490	size fractionation	GSM5750470	leaves	Akteur	GSM5750470	WDV infected	rep1
SRR17316491	size fractionation	GSM5750469	leaves	Akteur	GSM5750469	WDV infected	rep4
SRR17316492	size fractionation	GSM5750468	leaves	Akteur	GSM5750468	WDV infected	rep3
SRR17316493	size fractionation	GSM5750467	leaves	Akteur	GSM5750467	WDV infected	rep2
SRR17316494	size fractionation	GSM5750466	leaves	Akteur	GSM5750466	WDV infected	rep1
SRR17316495	size fractionation	GSM5750465	leaves	Akteur	GSM5750465	Non inoculated	rep4
SRR17316496	size fractionation	GSM5750464	leaves	Akteur	GSM5750464	Non inoculated	rep3
SRR17316497	size fractionation	GSM5750463	leaves	Akteur	GSM5750463	Non inoculated	rep2
SRR17316498	size fractionation	GSM5750462	leaves	Akteur	GSM5750462	Non inoculated	rep1
SRR17316499	size fractionation	GSM5750533	leaves	Akteur	GSM5750533	Non inoculated	rep4
SRR17316500	size fractionation	GSM5750532	leaves	Svitava	GSM5750532	Non inoculated	rep3
SRR17316501	size fractionation	GSM5750531	leaves	Svitava	GSM5750531	Non inoculated	rep2
SRR17316502	size fractionation	GSM5750530	leaves	Svitava	GSM5750530	Non inoculated	rep1
SRR17316503	size fractionation	GSM5750529	leaves	Svitava	GSM5750529	Non inoculated	rep4
SRR17316504	size fractionation	GSM5750528	leaves	Svitava	GSM5750528	Non inoculated	rep3
SRR17316505	size fractionation	GSM5750527	leaves	Svitava	GSM5750527	Non inoculated	rep2
SRR17316506	size fractionation	GSM5750526	leaves	Svitava	GSM5750526	Non inoculated	rep1
SRR17316507	size fractionation	GSM5750525	leaves	Svitava	GSM5750525	Non inoculated	rep4
SRR17316508	size fractionation	GSM5750524	leaves	Svitava	GSM5750524	Non inoculated	rep3
SRR17316509	size fractionation	GSM5750523	leaves	Svitava	GSM5750523	Non inoculated	rep2
SRR17316510	size fractionation	GSM5750522	leaves	Svitava	GSM5750522	Non inoculated	rep1
SRR17316511	size fractionation	GSM5750521	leaves	Svitava	GSM5750521	WDV infected	rep4
SRR17316512	size fractionation	GSM5750520	leaves	Svitava	GSM5750520	WDV infected	rep3
SRR17316513	size fractionation	GSM5750519	leaves	Svitava	GSM5750519	WDV infected	rep2
SRR17316514	size fractionation	GSM5750518	leaves	Svitava	GSM5750518	WDV infected	rep1
SRR17316515	size fractionation	GSM5750517	leaves	Svitava	GSM5750517	WDV infected	rep4
SRR17316516	size fractionation	GSM5750516	leaves	Svitava	GSM5750516	WDV infected	rep3
SRR17316517	size fractionation	GSM5750515	leaves	Svitava	GSM5750515	WDV infected	rep2
SRR17316518	size fractionation	GSM5750514	leaves	Svitava	GSM5750514	WDV infected	rep1
SRR17316519	size fractionation	GSM5750513	leaves	Svitava	GSM5750513	WDV infected	rep4
SRR17316520	size fractionation	GSM5750512	leaves	Svitava	GSM5750512	WDV infected	rep3
SRR17316521	size fractionation	GSM5750511	leaves	Svitava	GSM5750511	WDV infected	rep2
SRR17316522	size fractionation	GSM5750510	leaves	Svitava	GSM5750510	WDV infected	rep1
SRR17316571	size fractionation	GSM5750509	leaves	Fengyou	GSM5750509	Non inoculated	rep4
SRR17316572	size fractionation	GSM5750508	leaves	Fengyou	GSM5750508	Non inoculated	rep3
SRR17316573	size fractionation	GSM5750507	leaves	Fengyou	GSM5750507	Non inoculated	rep2
SRR17316574	size fractionation	GSM5750506	leaves	Fengyou	GSM5750506	Non inoculated	rep1
SRR17316575	size fractionation	GSM5750505	leaves	Fengyou	GSM5750505	WDV infected	rep4
SRR17316576	size fractionation	GSM5750504	leaves	Fengyou	GSM5750504	WDV infected	rep3
SRR17316577	size fractionation	GSM5750503	leaves	Fengyou	GSM5750503	WDV infected	rep2
SRR17316578	size fractionation	GSM5750502	leaves	Fengyou	GSM5750502	WDV infected	rep1
SRR17316579	size fractionation	GSM5750501	leaves	Fengyou	GSM5750501	WDV infected	rep4
SRR17316580	size fractionation	GSM5750500	leaves	Fengyou	GSM5750500	WDV infected	rep3
SRR17316581	size fractionation	GSM5750499	leaves	Fengyou	GSM5750499	WDV infected	rep2
SRR17316582	size fractionation	GSM5750498	leaves	Fengyou	GSM5750498	WDV infected	rep1
SRR17316583	size fractionation	GSM5750497	leaves	Fengyou	GSM5750497	WDV infected	rep4
SRR17316584	size fractionation	GSM5750496	leaves	Fengyou	GSM5750496	WDV infected	rep3
SRR17316585	size fractionation	GSM5750495	leaves	Fengyou	GSM5750495	WDV infected	rep2
SRR17316586	size fractionation	GSM5750494	leaves	Fengyou	GSM5750494	WDV infected	rep1
SRR17316587	size fractionation	GSM5750493	leaves	Fengyou	GSM5750493	Non inoculated	rep4
SRR17316588	size fractionation	GSM5750492	leaves	Fengyou	GSM5750492	Non inoculated	rep3
SRR17316589	size fractionation	GSM5750491	leaves	Fengyou	GSM5750491	Non inoculated	rep2
SRR17316590	size fractionation	GSM5750490	leaves	Fengyou	GSM5750490	Non inoculated	rep1
SRR17316591	size fractionation	GSM5750489	leaves	Fengyou	GSM5750489	Non inoculated	rep4
SRR17316592	size fractionation	GSM5750488	leaves	Fengyou	GSM5750488	Non inoculated	rep3
SRR17316593	size fractionation	GSM5750487	leaves	Fengyou	GSM5750487	Non inoculated	rep2
SRR17316594	size fractionation	GSM5750486	leaves	Fengyou	GSM5750486	Non inoculated	rep1

Run	LibrarySelection	Age	Tissue	Cultivar	Sample Name	geo_loc_name
SRR13619124	PCR	10 days	roots and leaves	wheat	Y174	China:Anhui
SRR13619125	PCR	10 days	roots and leaves	wheat	Y174	China:Anhui
SRR13619126	PCR	10 days	roots and leaves	wheat	Y174	China:Anhui
SRR13619127	PCR	10 days	roots and leaves	wheat	Y174	China:Anhui
SRR13619128	PCR	10 days	roots and leaves	wheat	Y174	China:Anhui
SRR13619129	PCR	10 days	roots and leaves	wheat	Y174	China:Anhui
SRR13619130	PCR	10 days	roots and leaves	wheat	Y174	China:Anhui
SRR13619131	PCR	10 days	roots and leaves	wheat	Y174	China:Anhui
SRR13619132	PCR	10 days	roots and leaves	wheat	Y174	China:Anhui
SRR13619133	PCR	10 days	roots and leaves	wheat	Y174	China:Anhui
SRR13619134	PCR	10 days	roots and leaves	wheat	Y174	China:Anhui
SRR13619135	PCR	10 days	roots and leaves	wheat	Y174	China:Anhui

Run	LibrarySelection	Library Name	Ecotype	Stage	Tissue	Sample Name	geo_loc_name
SRR13222412	PCR	SMI-1	Sumai3	flowering phase	spikelet and rachis	SM	China
SRR13222413	PCR	SMM-3	Sumai3	flowering phase	spikelet and rachis	SM	China
SRR13222414	PCR	SMM-2	Sumai3	flowering phase	spikelet and rachis	SM	China
SRR13222415	PCR	SMM-1	Sumai3	flowering phase	spikelet and rachis	SM	China
SRR13222416	PCR	CSI-3	Chinese spring	flowering phase	spikelet and rachis	CS	China
SRR13222417	PCR	CSI-2	Chinese spring	flowering phase	spikelet and rachis	CS	China
SRR13222418	PCR	CSI-1	Chinese spring	flowering phase	spikelet and rachis	CS	China
SRR13222419	PCR	CSM-3	Chinese spring	flowering phase	spikelet and rachis	CS	China
SRR13222420	PCR	SMI-3	Sumai3	flowering phase	spikelet and rachis	SM	China
SRR13222421	PCR	SMI-2	Sumai3	flowering phase	spikelet and rachis	SM	China
SRR13222422	PCR	CSM-2	Chinese spring	flowering phase	spikelet and rachis	CS	China
SRR13222423	PCR	CSM-1	Chinese spring	flowering phase	spikelet and rachis	CS	China

Run	LibrarySelection	Stage	Tissue	Sample Name	Treatment
SRR12419568	size fractionation	jointing stage	crown tissue colleected at jointing stage	GSM4717211	Non inoculated
SRR12419567	size fractionation	spring greenup stage	crown tissue colleected at spring greenup stage	GSM4717210	Non inoculated
SRR12419566	size fractionation	winter dormancy stage	crown tissue colleected at winter dormancy stage	GSM4717209	Non inoculated
SRR12419565	size fractionation	three leaf stage	crown tissue collected at the three leaf stage	GSM4717208	Non inoculated

Run	LibrarySelection	Library Name	Stage	Tissue	Cultivar	Sample Name	geo_loc_name	Treatment	Replicate
SRR12102896	size fractionation	sRNA-seq_spikelet_rep3	flowering	Spikelet	Chinese spriing	Spikelet_smallRNA_3	China:Wuhan	small RNA-seq of wheat	Replicate 3
SRR12102897	size fractionation	sRNA-seq_spikelet_rep2	flowering	Spikelet	Chinese spriing	Spikelet_smallRNA_2	China:Wuhan	small RNA-seq of wheat	Replicate 2
SRR12102898	size fractionation	sRNA-seq_spikelet_rep1	flowering	Spikelet	Chinese spriing	Spikelet_smallRNA_1	China:Wuhan	small RNA-seq of wheat	Replicate 1

Run	LibrarySelection	Library Name	Age	Tissue	Cultivar	Sample Name	geo_loc_name	Replicate
SRR10317096	PCR	SF1-1	early uninucleate	anther	wheat TCMS	SF1-1	China:shannxi	biological replicate1
SRR10317097	PCR	SS3-3	binucleate	anther	wheat TCMS	SS3-3	China:shannxi	biological replicate3
SRR10317098	PCR	SS3-2	binucleate	anther	wheat TCMS	SS3-2	China:shannxi	biological replicate2
SRR10317099	PCR	SS3-1	binucleate	anther	wheat TCMS	SS3-1	China:shannxi	biological replicate1
SRR10317100	PCR	SS2-3	late uninucleate	anther	wheat TCMS	SS2-3	China:shannxi	biological replicate3
SRR10317101	PCR	SS2-2	late uninucleate	anther	wheat TCMS	SS2-2	China:shannxi	biological replicate2
SRR10317102	PCR	SS2-1	late uninucleate	anther	wheat TCMS	SS2-1	China:shannxi	biological replicate1
SRR10317103	PCR	SS1-3	early uninucleate	anther	wheat TCMS	SS1-3	China:shannxi	biological replicate3
SRR10317104	PCR	SF3-3	binucleate	anther	wheat TCMS	SF3-3	China:shannxi	biological replicate3
SRR10317105	PCR	SF3-2	binucleate	anther	wheat TCMS	SF3-2	China:shannxi	biological replicate2
SRR10317106	PCR	SF3-1	binucleate	anther	wheat TCMS	SF3-1	China:shannxi	biological replicate1
SRR10317107	PCR	SF2-3	late uninucleate	anther	wheat TCMS	SF2-3	China:shannxi	biological replicate3
SRR10317108	PCR	SF2-2	late uninucleate	anther	wheat TCMS	SF2-2	China:shannxi	biological replicate2
SRR10317109	PCR	SF2-1	late uninucleate	anther	wheat TCMS	SF2-1	China:shannxi	biological replicate1
SRR10317110	PCR	SF1-3	early uninucleate	anther	wheat TCMS	SF1-3	China:shannxi	biological replicate3
SRR10317111	PCR	SF1-2	early uninucleate	anther	wheat TCMS	SF1-2	China:shannxi	biological replicate2
SRR10317112	PCR	SS1-2	early uninucleate	anther	wheat TCMS	SS1-2	China:shannxi	biological replicate2
SRR10317113	PCR	SS1-1	early uninucleate	anther	wheat TCMS	SS1-1	China:shannxi	biological replicate1

Run	LibrarySelection	Library Name	Stage	Tissue	Cultivar	Sample Name	geo_loc_name	Treatment
SRR10051481	cDNA	N0_17D_1	17_days_after_anthesis	seed	Zhengmai119	miRNA_LN17D1	China:Zhengzhou	different nitrogen level
SRR10051482	cDNA	Z_17D_3	17_days_after_anthesis	seed	Zhengmai119	miRNA_HN17D3	China:Zhengzhou	different nitrogen level
SRR10051483	cDNA	Z_17D_2	17_days_after_anthesis	seed	Zhengmai119	miRNA_HN17D2	China:Zhengzhou	different nitrogen level
SRR10051484	cDNA	Z_17D_1	17_days_after_anthesis	seed	Zhengmai119	miRNA_HN17D1	China:Zhengzhou	-
SRR10051485	cDNA	N0_6D_3	6_days_after_anthesis	seed	Zhengmai119	miRNA_LN6D3	China:Zhengzhou	-
SRR10051486	cDNA	N0_6D_2	6_days_after_anthesis	seed	Zhengmai119	miRNA_LN6D2	China:Zhengzhou	different nitrogen level
SRR10051487	cDNA	N0_6D_1	6_days_after_anthesis	seed	Zhengmai119	miRNA_LN6D1	China:Zhengzhou	different nitrogen level
SRR10051488	cDNA	Z_6D_3	6_days_after_anthesis	seed	Zhengmai119	miRNA_HN6D3	China:Zhengzhou	-
SRR10051489	cDNA	N0_27D_3	27_days_after_anthesis	seed	Zhengmai119	miRNA_LN27D3	China:Zhengzhou	different nitrogen level
SRR10051490	cDNA	N0_27D_2	27_days_after_anthesis	seed	Zhengmai119	miRNA_LN27D2	China:Zhengzhou	different nitrogen level
SRR10051491	cDNA	N0_27D_1	27_days_after_anthesis	seed	Zhengmai119	miRNA_LN27D1	China:Zhengzhou	different nitrogen level
SRR10051492	cDNA	Z_27D_3	27_days_after_anthesis	seed	Zhengmai119	miRNA_HN27D3	China:Zhengzhou	different nitrogen level
SRR10051493	cDNA	Z_27D_2	27_days_after_anthesis	seed	Zhengmai119	miRNA_HN27D2	China:Zhengzhou	different nitrogen level
SRR10051494	cDNA	Z_27D_1	27_days_after_anthesis	seed	Zhengmai119	miRNA_HN27D1	China:Zhengzhou	different nitrogen level
SRR10051495	cDNA	N0_17D_3	17_days_after_anthesis	seed	Zhengmai119	miRNA_LN17D3	China:Zhengzhou	different nitrogen level
SRR10051496	cDNA	N0_17D_2	17_days_after_anthesis	seed	Zhengmai119	miRNA_LN17D2	China:Zhengzhou	different nitrogen level
SRR10051497	cDNA	Z_6D_2	6_days_after_anthesis	seed	Zhengmai119	miRNA_HN6D2	China:Zhengzhou	-
SRR10051498	cDNA	Z_6D_1	6_days_after_anthesis	seed	Zhengmai119	miRNA_HN6D1	China:Zhengzhou	different nitrogen level

Run	Library Name	Age	Tissue	Cultivar	Sample Name	geo_loc_name	Treatment
SRR9712609	Tae Bgt 96224	12 days	leaf	Chinese Spring	Tae Bgt 96224	Switzerland: Zurich	Blumeria graminis infection
SRR9712610	Tae Bgt 94202	12 days	leaf	Chinese Spring	Tae Bgt 94202	Switzerland: Zurich	Blumeria graminis infection
SRR9712611	Tae Csuninf	12 days	leaf	Chinese Spring	Tae Csuninf	Switzerland: Zurich	-
SRR9712612	Tae Bgt JIW2	12 days	leaf	Chinese Spring	Tae Bgt JIW2	Switzerland: Zurich	Blumeria graminis infection

Run	LibrarySelection	Stage	Tissue	Cultivar	Sample Name	geo_loc_name
SRR9696790	RT-PCR	late double ridge stage	young spikes	guomai301	WT-ys-S2a	China:Zhengzhou
SRR9696791	RT-PCR	late double ridge stage	young stem tips	guomai301	WT-st-S1c	China:Zhengzhou
SRR9696792	RT-PCR	late double ridge stage	young stem tips	guomai301	WT-st-S1b	China:Zhengzhou
SRR9696793	RT-PCR	late double ridge stage	young stem tips	guomai301	WT-st-S1a	China:Zhengzhou
SRR9696794	RT-PCR	late double ridge stage	young stem tips	guomai301	ptsd1-st-S3b	China:Zhengzhou
SRR9696795	RT-PCR	late double ridge stage	young stem tips	guomai301	ptsd1-st-S3a	China:Zhengzhou
SRR9696796	RT-PCR	late double ridge stage	young spikes	guomai301	WT-ys-S2c	China:Zhengzhou
SRR9696797	RT-PCR	late double ridge stage	young spikes	guomai301	WT-ys-S2b	China:Zhengzhou
SRR9696798	RT-PCR	late double ridge stage	young spikes	guomai301	ptsd1-ys-S4a	China:Zhengzhou
SRR9696799	RT-PCR	late double ridge stage	young stem tips	guomai301	ptsd1-st-S3c	China:Zhengzhou
SRR9696800	RT-PCR	late double ridge stage	young spikes	guomai301	ptsd1-ys-S4c	China:Zhengzhou
SRR9696801	RT-PCR	late double ridge stage	young spikes	guomai301	ptsd1-ys-S4b	China:Zhengzhou

Run	LibrarySelection	Library Name	Stage	Tissue	Cultivar	Sample Name	geo_loc_name
SRR9648458	RT-PCR	ys_1_miRNA	spike differentiation stage 5	young spikes	Guomai 301	ys_1_miRNA	China:Zhengzhou
SRR9648459	RT-PCR	ys_3_miRNA	spike differentiation stage 5	young spikes	Guomai 301	ys_3_miRNA	China:Zhengzhou
SRR9648460	RT-PCR	ys_2_miRNA	spike differentiation stage 5	young spikes	Guomai 301	ys_2_miRNA	China:Zhengzhou
SRR9648461	RT-PCR	st_2_miRNA	spike differentiation stage 5	stem tips	Guomai 301	st_2_miRNA	China:Zhengzhou
SRR9648462	RT-PCR	st_1_miRNA	spike differentiation stage 5	stem tips	Guomai 301	st_1_miRNA	China:Zhengzhou
SRR9648463	RT-PCR	tp_1_miRNA	3-leaf to 4-leaf stage	tiller primordia	Guomai 301	tp_1_miRNA	China:Zhengzhou
SRR9648464	RT-PCR	st_3_miRNA	spike differentiation stage 5	stem tips	Guomai 301	st_3_miRNA	China:Zhengzhou
SRR9648465	RT-PCR	tp_3_miRNA	3-leaf to 4-leaf stage	tiller primordia	Guomai 301	tp_3_miRNA	China:Zhengzhou
SRR9648466	RT-PCR	tp_2_miRNA	3-leaf to 4-leaf stage	tiller primordia	Guomai 301	tp_2_miRNA	China:Zhengzhou

Run	LibrarySelection	Genotype	Stage	Tissue	Cultivar	Sample Name
SRR8467485	size fractionation	wild type	jointing stage	leaf	winter wheat Shimai 22	GSM3573290
SRR8467484	size fractionation	wild type	spring greenup stage	leaf	winter wheat Shimai 22	GSM3573289
SRR8467483	size fractionation	wild type	winter dormancy stage	leaf	winter wheat Shimai 22	GSM3573288
SRR8467482	size fractionation	wild type	winter wheat collected at three leaf stage	leaf	winter wheat Shimai 22	GSM3573287

Run	LibrarySelection	Library Name	Sample Name
ERR2777611	size fractionation	L001_R1_001	SAMEA4883093
ERR2777610	size fractionation	L001_R1_001	SAMEA4883092
ERR2777609	size fractionation	L001_R1_001	SAMEA4883091
ERR2777608	size fractionation	L001_R1_001	SAMEA4883090
ERR2777607	size fractionation	L001_R1_001	SAMEA4883089
ERR2777606	size fractionation	L001_R1_001	SAMEA4883088
ERR2777605	size fractionation	L001_R1_001	SAMEA4883087
ERR2777604	size fractionation	L001_R1_001	SAMEA4883086
ERR2777603	size fractionation	L001_R1_001	SAMEA4883085
ERR2777602	size fractionation	L001_R1_001	SAMEA4883084
ERR2777601	size fractionation	L001_R1_001	SAMEA4883083
ERR2777600	size fractionation	L001_R1_001	SAMEA4883082
ERR2777599	size fractionation	L001_R1_001	SAMEA4883081
ERR2777598	size fractionation	L001_R1_001	SAMEA4883080
ERR2777597	size fractionation	L001_R1_001	SAMEA4883079

Run	Library Name	Ecotype	Stage	Tissue	Cultivar	Sample Name	geo_loc_name	Lat_Lon	Treatment	Replicate
SRR8612151	LK120	hexaploid	three leaf stage	root	Kenong9204	sample_6_deficient_K_120h_root	China	38.82 N 115.44 E	deficient-K treatment for 120h	LK_120
SRR8612152	LK48	hexaploid	three leaf stage	root	Kenong9204	sample_5_deficient_K_48h_root	China	38.82 N 115.44 E	deficient-K treatment for 48h	LK_48
SRR8612153	LK6	hexaploid	three leaf stage	root	Kenong9204	sample_2_deficient_K_6h_root	China	38.82 N 115.44 E	deficient-K treatment for 6h	LK_6
SRR8612154	CK	hexaploid	three leaf stage	root	Kenong9204	sample_1_deficient_K_0h_root	China	38.82 N 115.44 E	deficient-K treatment for 0h	CK
SRR8612155	LK24	hexaploid	three leaf stage	root	Kenong9204	sample_4_deficient_K_24h_root	China	38.82 N 115.44 E	deficient-K treatment for 24h	LK_24
SRR8612156	LK12	hexaploid	three leaf stage	root	Kenong9204	sample_3_deficient_K_12h_root	China	38.82 N 115.44 E	deficient-K treatment for 12h	LK_12

Run	LibrarySelection	Library Name	phenotype	Stage	Tissue	Cultivar	Sample Name	geo_loc_name	Treatment	Replicate
SRR8432572	RT-PCR	WSB_sRNA-2	R	adult-plant stage	spikelets	Wangshuibai	WSB_sRNA-2	China: Jiangsu	Fusarium head blight	WSB_small_RNA_library2
SRR8432573	RT-PCR	WSB_sRNA-1	R	adult-plant stage	spikelets	Wangshuibai	WSB_sRNA-1	China: Jiangsu	Fusarium head blight	WSB_small_RNA_library1
SRR8432587	RT-PCR	Sumai3_sRNA-2	R	adult-plant stage	spikelets	Sumai_3	Sumai3_sRNA-2	China: Jiangsu	Fusarium head blight	Sumai3_small_RNA_library2
SRR8432590	RT-PCR	Sumai3_sRNA-1	R	adult-plant stage	spikelets	Sumai_3	Sumai3_sRNA-1	China: Jiangsu	Fusarium head blight	Sumai3_small_RNA_library1

Run	LibrarySelection	Library Name	Stage	Tissue	Cultivar	Sample Name	geo_loc_name
SRR8374804	cDNA	T3	seedling stage	leaves	Xiaoyan 6	Triticum aestivum-leaves	China:shannxi
SRR8374805	cDNA	T2	seedling stage	leaves	Xiaoyan 6	Triticum aestivum-leaves	China:shannxi
SRR8374806	cDNA	T1	seedling stage	leaves	Xiaoyan 6	Triticum aestivum-leaves	China:shannxi

Run	LibrarySelection	Library Name	Tissue	Cultivar	Sample Name	geo_loc_name	Replicate
SRR7550252	RANDOM	wheat_mock_14dpi_rep1	Leaves	Drifter	wheat	Switzerland	rep1
SRR7550253	RANDOM	wheat_mock_12dpi_rep3	Leaves	Drifter	wheat	Switzerland	rep3
SRR7550254	RANDOM	wheat_mock_14dpi_rep3	Leaves	Drifter	wheat	Switzerland	rep3
SRR7550255	RANDOM	wheat_mock_14dpi_rep2	Leaves	Drifter	wheat	Switzerland	rep2
SRR7550256	RANDOM	wheat_mock_7dpi_rep3	Leaves	Drifter	wheat	Switzerland	rep3
SRR7550257	RANDOM	wheat_mock_7dpi_rep2	Leaves	Drifter	wheat	Switzerland	rep2
SRR7550258	RANDOM	wheat_mock_12dpi_rep2	Leaves	Drifter	wheat	Switzerland	rep2
SRR7550259	RANDOM	wheat_mock_12dpi_rep1	Leaves	Drifter	wheat	Switzerland	rep1
SRR7550270	RANDOM	3D7_14dpi_rep2	Leaves	Drifter	wheat	Switzerland	rep2
SRR7550271	RANDOM	3D7_14dpi_rep1	Leaves	Drifter	wheat	Switzerland	rep1
SRR7550272	RANDOM	3D7_12dpi_rep3	Leaves	Drifter	wheat	Switzerland	rep3
SRR7550273	RANDOM	3D7_12dpi_rep2	Leaves	Drifter	wheat	Switzerland	rep2
SRR7550274	RANDOM	3D7_12dpi_rep1	Leaves	Drifter	wheat	Switzerland	rep1
SRR7550275	RANDOM	3D7_7dpi_rep3	Leaves	Drifter	wheat	Switzerland	rep3
SRR7550276	RANDOM	3D7_7dpi_rep2	Leaves	Drifter	wheat	Switzerland	rep2
SRR7550277	RANDOM	3D7_7dpi_rep1	Leaves	Drifter	wheat	Switzerland	rep1
SRR7550278	RANDOM	wheat_mock_7dpi_rep1	Leaves	Drifter	wheat	Switzerland	rep1
SRR7550279	RANDOM	3D7_14dpi_rep3	Leaves	Drifter	wheat	Switzerland	rep3

Run	LibrarySelection	Biome	Sample Name	geo_loc_name	Environment
ERR2235370	RANDOM	rachis	SAMEA104455176	Canada	greenhouse
ERR2235369	RANDOM	rachis	SAMEA104455175	Canada	greenhouse
ERR2235368	RANDOM	rachis	SAMEA104455174	Canada	greenhouse
ERR2235367	RANDOM	rachis	SAMEA104455173	Canada	greenhouse
ERR2235366	RANDOM	rachis	SAMEA104455172	Canada	greenhouse
ERR2235365	RANDOM	rachis	SAMEA104455171	Canada	greenhouse
ERR2235364	RANDOM	spikelet	SAMEA104455170	Canada	greenhouse
ERR2235363	RANDOM	spikelet	SAMEA104455169	Canada	greenhouse
ERR2235362	RANDOM	spikelet	SAMEA104455168	Canada	greenhouse
ERR2235361	RANDOM	spikelet	SAMEA104455167	Canada	greenhouse
ERR2235360	RANDOM	spikelet	SAMEA104455166	Canada	greenhouse
ERR2235359	RANDOM	spikelet	SAMEA104455165	Canada	greenhouse
ERR2235358	RANDOM	rachis	SAMEA104455164	Canada	greenhouse
ERR2235357	RANDOM	rachis	SAMEA104455163	Canada	greenhouse
ERR2235356	RANDOM	rachis	SAMEA104455162	Canada	greenhouse
ERR2235355	RANDOM	rachis	SAMEA104455161	Canada	greenhouse
ERR2235354	RANDOM	rachis	SAMEA104455160	Canada	greenhouse
ERR2235353	RANDOM	rachis	SAMEA104455159	Canada	greenhouse
ERR2235352	RANDOM	spikelet	SAMEA104455158	Canada	greenhouse
ERR2235351	RANDOM	spikelet	SAMEA104455157	Canada	greenhouse
ERR2235350	RANDOM	spikelet	SAMEA104455156	Canada	greenhouse
ERR2235349	RANDOM	spikelet	SAMEA104455155	Canada	greenhouse
ERR2235348	RANDOM	spikelet	SAMEA104455154	Canada	greenhouse
ERR2235347	RANDOM	spikelet	SAMEA104455153	Canada	greenhouse

Run	LibrarySelection	Library Name	Stage	Tissue	Cultivar	Sample Name	geo_loc_name	Treatment
SRR6328644	RT-PCR	SR4A	three leaves stage	root	SR4	sRNAseq_9	China:shandong	pH8.9
SRR6328645	RT-PCR	JNA	three leaves stage	root	JN177	sRNAseq_3	China:shandong	pH8.9
SRR6328646	RT-PCR	SR3C	three leaves stage	root	SR3	sRNAseq_4	China:shandong	control
SRR6328647	RT-PCR	JNC	three leaves stage	root	JN177	sRNAseq_1	China:shandong	control
SRR6328648	RT-PCR	JNS	three leaves stage	root	JN177	sRNAseq_2	China:shandong	200mM NaCl
SRR6328649	RT-PCR	SR4C	three leaves stage	root	SR4	sRNAseq_7	China:shandong	control
SRR6328650	RT-PCR	SR4S	three leaves stage	root	SR4	sRNAseq_8	China:shandong	200mM NaCl
SRR6328651	RT-PCR	SR3S	three leaves stage	root	SR3	sRNAseq_5	China:shandong	200mM NaCl
SRR6328652	RT-PCR	SR3A	three leaves stage	root	SR3	sRNAseq_6	China:shandong	pH8.9

Run	LibrarySelection	Library Name	Stage	Tissue	Cultivar	Sample Name	Replicate
SRR5944333	size fractionation	WT-sRNA-1HAI-rep1	1-12 HAI	germinating seed	Jimai5265	WT_JM	rep1
SRR5944334	size fractionation	WT-sRNA-1HAI-rep2	1-12 HAI	germinating seed	Jimai5265	WT_JM	rep2
SRR5944335	size fractionation	WT-sRNA-6HAI-rep1	1-12 HAI	germinating seed	Jimai5265	WT_JM	rep1
SRR5944336	size fractionation	WT-sRNA-6HAI-rep2	1-12 HAI	germinating seed	Jimai5265	WT_JM	rep2
SRR5944337	size fractionation	WT-sRNA-12HAI-rep1	1-12 HAI	germinating seed	Jimai5265	WT_JM	rep1
SRR5944338	size fractionation	WT-sRNA-12HAI-rep2	1-12 HAI	germinating seed	Jimai5265	WT_JM	rep2

Run	LibrarySelection	Stage	Tissue	Sample Name	geo_loc_name	Treatment
SRR5816454	RANDOM	24h	root	wr_173	China:Beijing	Ca2+-channel blocker

Run	LibrarySelection	Stage	Tissue	Cultivar	Sample Name	geo_loc_name	Replicate
SRR5461177	cDNA	TS	Spike	Chinese Spring	TS-2	China	biological replicate 2
SRR5461176	cDNA	TS	Spike	Chinese Spring	TS-1	China	biological replicate 1
SRR5460972	cDNA	AM	Spike	Chinese Spring	AM-2	China	biological replicate 2
SRR5460967	cDNA	AM	Spike	Chinese Spring	AM-1	China	biological replicate 1
SRR5460949	cDNA	FM	Spike	Chinese Spring	FM-2	China	biological replicate 2
SRR5460941	cDNA	FM	Spike	Chinese Spring	FM-1	China	biological replicate 1
SRR5460939	cDNA	DR	Spike	Chinese Spring	DR-2	China	biological replicate 2
SRR5460930	cDNA	DR	Spike	Chinese Spring	DR-1	China	biological replicate 1

Run	Library Name	Stage	Tissue	Cultivar	Sample Name	geo_loc_name
SRR5381543	CSA	anther	anther	Chinese Spring	Triticum aestivum L. Chinese Spring (CS)	China
SRR5381542	CS-3CA	anther	anther	Chinese Spring	Chinese Spring-gametocidal 3C chromosome monosomic addition line (CS-3C)	China

Run	LibrarySelection	Library Name	Age	Tissue	Cultivar	Sample Name	geo_loc_name	Treatment	Replicate
SRR5270350	size fractionation	12dpi_C_R1	17 days	First expanded leaf	ProINTA Federal	12dpi_C_R1	Argentina: Cordoba	Control 12 dpi Replicate 1	Replicate 1
SRR5270349	size fractionation	12dpi_C_R2	17 days	First expanded leaf	ProINTA Federal	12dpi_C_R2	Argentina: Cordoba	Control 12 dpi Replicate 2	Replicate 2
SRR5270348	size fractionation	12dpi_T_R1	17 days	First expanded leaf	ProINTA Federal	12dpi_T_R1	Argentina: Cordoba	Infected 12 dpi Replicate 1	Replicate 1
SRR5270347	size fractionation	12dpi_T_R2	17 days	First expanded leaf	ProINTA Federal	12dpi_T_R2	Argentina: Cordoba	Infected 12 dpi Replicate 2	Replicate 2
SRR5270346	size fractionation	21dpi_C_R1	26 days	First expanded leaf	ProINTA Federal	21dpi_C_R1	Argentina: Cordoba	Control 21 dpi Replicate 1	Replicate 1
SRR5270345	size fractionation	21dpi_C_R2	26 days	First expanded leaf	ProINTA Federal	21dpi_C_R2	Argentina: Cordoba	Control 21 dpi Replicate 2	Replicate 2
SRR5270344	size fractionation	21dpi_T_R1	26 days	First expanded leaf	ProINTA Federal	21dpi_T_R1	Argentina: Cordoba	Infected 21 dpi Replicate 1	Replicate 1
SRR5270343	size fractionation	21dpi_T_R2	26 days	First expanded leaf	ProINTA Federal	21dpi_T_R2	Argentina: Cordoba	Infected 21 dpi Replicate 2	Replicate 2

Run	LibrarySelection	Library Name	Age	Tissue	Cultivar	Sample Name	geo_loc_name	Replicate
SRR5096892	size fractionation	sRNA_DDAA1	30 days	Leaf 30D	TQ27 X TMU38	sRNA_DDAA1	China:Beijing	rep1
SRR5096890	size fractionation	sRNA_DDAA2	30 days	Leaf 31D	TQ27 X TMU38	sRNA_DDAA2	China:Beijing	rep2
SRR5096872	size fractionation	sRNA_AADD1	30 days	Leaf 32D	TMU38 X TQ27	sRNA_AADD1	China:Beijing	rep1
SRR5096869	size fractionation	sRNA_AADD2	30 days	Leaf 33D	TMU38 X TQ27	sRNA_AADD2	China:Beijing	rep2
SRR5096896	size fractionation	sRNA_AA2	30 days	Leaf 30D	TMU38	sRNA_AA2	China:Beijing	-
SRR5096879	size fractionation	sRNA_AA1	30 days	Leaf 30D	TMU38	sRNA_AA1	China:Beijing	-
SRR5096877	size fractionation	sRNA_DD1	30 days	Leaf 30D	TQ27	sRNA_DD1	China:Beijing	-
SRR5096871	size fractionation	sRNA_DD2	30 days	Leaf 30D	TQ27	sRNA_DD2	China:Beijing	-

Run	LibrarySelection	Library Name	Stage	Tissue	Cultivar	Sample Name	geo_loc_name	Replicate
SRR4417233	size fractionation	L21A	Mature seed	Seed	L21	L21	China	rep1
SRR4417232	size fractionation	J22C	Mature seed	Seed	J22	J22	China	rep3
SRR4417231	size fractionation	J22B	Mature seed	Seed	J22	J22	China	rep2
SRR4417230	size fractionation	J22A	Mature seed	Seed	J22	J22	China	rep1
SRR4417229	size fractionation	J19C	Mature seed	Seed	J19	J19	China	rep3
SRR4417228	size fractionation	J19B	Mature seed	Seed	J19	J19	China	rep2
SRR4417227	size fractionation	J19A	Mature seed	Seed	J19	J19	China	rep1
SRR4417226	size fractionation	T349C	Mature seed	Seed	T349	T349	China	rep3
SRR4417225	size fractionation	L21C	Mature seed	Seed	L21	L21	China	rep3
SRR4417224	size fractionation	L21B	Mature seed	Seed	L21	L21	China	rep2
SRR4417223	size fractionation	T349B	Mature seed	Seed	T349	T349	China	rep2
SRR4417222	size fractionation	T349A	Mature seed	Seed	T349	T349	China	rep1

Run	LibrarySelection	Library Name	genotype	Stage	Tissue	Phenotype	Sample Name	geo_loc_name	Replicate
SRR4114480	RANDOM	7294_sRNASeq	7294	booting	Leaf sheath	glaucous	7294_sRNASeq	Canada: Saskatchewan	-
SRR4114479	RANDOM	7293_sRNASeq	7293	booting	Leaf sheath	glaucous	7293_sRNASeq	Canada: Saskatchewan	-
SRR4114478	RANDOM	7290_sRNASeq	7290	booting	Leaf sheath	glaucous	7290_sRNASeq	Canada: Saskatchewan	-
SRR4114477	RANDOM	7289_sRNASeq	7289	booting	Leaf sheath	glaucous	7289_sRNASeq	Canada: Saskatchewan	-
SRR4114476	RANDOM	7287_sRNASeq	7287	booting	Leaf sheath	non-glaucous	7287_sRNASeq	Canada: Saskatchewan	-
SRR4114475	RANDOM	7285_sRNASeq	7285	booting	Leaf sheath	non-glaucous	7285_sRNASeq	Canada: Saskatchewan	-
SRR4114473	RANDOM	7282_sRNASeq	7282	booting	Leaf sheath	non-glaucous	7282_sRNASeq	Canada: Saskatchewan	-
SRR4114472	RANDOM	7281_sRNASeq	7281	booting	Leaf sheath	non-glaucous	7281_sRNASeq	Canada: Saskatchewan	-
SRR4114471	RANDOM	7279_sRNASeq	7279	booting	Leaf sheath	non-glaucous	7279_sRNASeq	Canada: Saskatchewan	-
SRR4114460	RANDOM	D051N-2_sRNASeq	D051N	booting	Leaf sheath	non-glaucous	D051N-2_sRNASeq	Canada: Saskatchewan	rep2
SRR4114459	RANDOM	D051N-1_sRNASeq	D051N	booting	Leaf sheath	non-glaucous	D051N-1_sRNASeq	Canada: Saskatchewan	rep1
SRR4114458	RANDOM	D051-2_sRNASeq	D051	booting	Leaf sheath	glaucous	D051-2_sRNASeq	Canada: Saskatchewan	rep2
SRR4114457	RANDOM	D051-1_sRNASeq	D051	booting	Leaf sheath	glaucous	D051-1_sRNASeq	Canada: Saskatchewan	rep1
SRR4114456	RANDOM	AG2N-4_sRNASeq	AG2N	booting	Leaf sheath	non-glaucous	AG2N-4_sRNASeq	Canada: Saskatchewan	rep4
SRR4114455	RANDOM	AG2N-3_sRNASeq	AG2N	booting	Leaf sheath	non-glaucous	AG2N-3_sRNASeq	Canada: Saskatchewan	rep3
SRR4114454	RANDOM	AG2N-2_sRNASeq	AG2N	booting	Leaf sheath	non-glaucous	AG2N-2_sRNASeq	Canada: Saskatchewan	rep2
SRR4114453	RANDOM	AG2N-1_sRNASeq	AG2N	booting	Leaf sheath	non-glaucous	AG2N-1_sRNASeq	Canada: Saskatchewan	rep1
SRR4114451	RANDOM	AG2F1-2_sRNASeq	AG2F1	booting	Leaf sheath	non-glaucous	AG2F1-2_sRNASeq	Canada: Saskatchewan	rep2
SRR4114450	RANDOM	AG2F1-1_sRNASeq	AG2F1	booting	Leaf sheath	non-glaucous	AG2F1-1_sRNASeq	Canada: Saskatchewan	rep1
SRR4114449	RANDOM	AG2-4_sRNASeq	AG2	booting	Leaf sheath	glaucous	AG2-4_sRNASeq	Canada: Saskatchewan	rep4
SRR4114448	RANDOM	AG2-3_sRNASeq	AG2	booting	Leaf sheath	glaucous	AG2-3_sRNASeq	Canada: Saskatchewan	rep3
SRR4114447	RANDOM	AG2-2_sRNASeq	AG2	booting	Leaf sheath	glaucous	AG2-2_sRNASeq	Canada: Saskatchewan	rep2
SRR4114446	RANDOM	AG2-2_F1C_sRNASeq	AG2_F1C	booting	Leaf sheath	glaucous	AG2-2_F1C_sRNASeq	Canada: Saskatchewan	rep2
SRR4114445	RANDOM	AG2-1_sRNASeq	AG2	booting	Leaf sheath	glaucous	AG2-1_sRNASeq	Canada: Saskatchewan	rep1
SRR4114444	RANDOM	AG2-1_F1C_sRNASeq	AG2_F1C	booting	Leaf sheath	glaucous	AG2-1_F1C_sRNASeq	Canada: Saskatchewan	rep1
SRR4114443	RANDOM	AG1N-2_sRNASeq	AG1N	booting	Leaf sheath	non-glaucous	AG1N-2_sRNASeq	Canada: Saskatchewan	rep2
SRR4114442	RANDOM	AG1N-1_sRNASeq	AG1N	booting	Leaf sheath	non-glaucous	AG1N-1_sRNASeq	Canada: Saskatchewan	rep1
SRR4114440	RANDOM	AG1F1-2_sRNASeq	AG1F1	booting	Leaf sheath	non-glaucous	AG1F1-2_sRNASeq	Canada: Saskatchewan	rep2
SRR4114439	RANDOM	AG1F1-1_sRNASeq	AG1F1	booting	Leaf sheath	non-glaucous	AG1F1-1_sRNASeq	Canada: Saskatchewan	rep1
SRR4114438	RANDOM	AG1-2_sRNASeq	AG1	booting	Leaf sheath	glaucous	AG1-2_sRNASeq	Canada: Saskatchewan	rep2
SRR4114437	RANDOM	AG1-1_sRNASeq	AG1	booting	Leaf sheath	glaucous	AG1-1_sRNASeq	Canada: Saskatchewan	rep1
SRR4114436	RANDOM	AE3N-2_sRNASeq	AE3N	booting	Leaf sheath	non-glaucous	AE3N-2_sRNASeq	Canada: Saskatchewan	rep2
SRR4114435	RANDOM	AE3N-1_sRNASeq	AE3N	booting	Leaf sheath	non-glaucous	AE3N-1_sRNASeq	Canada: Saskatchewan	rep1
SRR4114434	RANDOM	AE3F1-2_sRNASeq	AE3F1	booting	Leaf sheath	non-glaucous	AE3F1-2_sRNASeq	Canada: Saskatchewan	rep2
SRR4114433	RANDOM	AE3F1-1_sRNASeq	AE3F1	booting	Leaf sheath	non-glaucous	AE3F1-1_sRNASeq	Canada: Saskatchewan	rep1
SRR4114432	RANDOM	AE3-2_sRNASeq	AE3	booting	Leaf sheath	glaucous	AE3-2_sRNASeq	Canada: Saskatchewan	rep2
SRR4114431	RANDOM	AE3-1_sRNASeq	AE3	booting	Leaf sheath	glaucous	AE3-1_sRNASeq	Canada: Saskatchewan	rep1

Run	LibrarySelection	SAMPLING_TIME	Cultivar	Sample Name	Treatment	Replicate
SRR3721412	size fractionation	10 day after treatment (DAT)	Glenlea	GSM2214310	UV	Rep3
SRR3721411	size fractionation	10 day after treatment (DAT)	Glenlea	GSM2214309	Light	Rep3
SRR3721410	size fractionation	10 day after treatment (DAT)	Glenlea	GSM2214308	Heat	Rep3
SRR3721409	size fractionation	10 day after treatment (DAT)	Glenlea	GSM2214307	Control	Rep3
SRR3721408	size fractionation	10 day after treatment (DAT)	Glenlea	GSM2214306	UV	Rep2
SRR3721407	size fractionation	10 day after treatment (DAT)	Glenlea	GSM2214305	Light	Rep2
SRR3721406	size fractionation	10 day after treatment (DAT)	Glenlea	GSM2214304	Heat	Rep2
SRR3721405	size fractionation	10 day after treatment (DAT)	Glenlea	GSM2214303	Control	Rep2
SRR3721404	size fractionation	10 day after treatment (DAT)	Glenlea	GSM2214302	UV	Rep1
SRR3721403	size fractionation	10 day after treatment (DAT)	Glenlea	GSM2214301	Light	Rep1
SRR3721402	size fractionation	10 day after treatment (DAT)	Glenlea	GSM2214300	Heat	Rep1
SRR3721401	size fractionation	10 day after treatment (DAT)	Glenlea	GSM2214299	Control	Rep1
SRR3721400	size fractionation	7 day after treatment (DAT)	Glenlea	GSM2214298	UV	Rep3
SRR3721399	size fractionation	7 day after treatment (DAT)	Glenlea	GSM2214297	Light	Rep3
SRR3721398	size fractionation	7 day after treatment (DAT)	Glenlea	GSM2214296	Heat	Rep3
SRR3721397	size fractionation	7 day after treatment (DAT)	Glenlea	GSM2214295	Control	Rep3
SRR3721396	size fractionation	7 day after treatment (DAT)	Glenlea	GSM2214294	UV	Rep2
SRR3721395	size fractionation	7 day after treatment (DAT)	Glenlea	GSM2214293	Light	Rep2
SRR3721394	size fractionation	7 day after treatment (DAT)	Glenlea	GSM2214292	Heat	Rep2
SRR3721393	size fractionation	7 day after treatment (DAT)	Glenlea	GSM2214291	Control	Rep2
SRR3721392	size fractionation	7 day after treatment (DAT)	Glenlea	GSM2214290	UV	Rep1
SRR3721391	size fractionation	7 day after treatment (DAT)	Glenlea	GSM2214289	Light	Rep1
SRR3721390	size fractionation	7 day after treatment (DAT)	Glenlea	GSM2214288	Heat	Rep1
SRR3721389	size fractionation	7 day after treatment (DAT)	Glenlea	GSM2214287	Control	Rep1
SRR3721388	size fractionation	3 day after treatment (DAT)	Glenlea	GSM2214286	UV	Rep3
SRR3721387	size fractionation	3 day after treatment (DAT)	Glenlea	GSM2214285	Light	Rep3
SRR3721386	size fractionation	3 day after treatment (DAT)	Glenlea	GSM2214284	Heat	Rep3
SRR3721385	size fractionation	3 day after treatment (DAT)	Glenlea	GSM2214283	Control	Rep3
SRR3721384	size fractionation	3 day after treatment (DAT)	Glenlea	GSM2214282	UV	Rep2
SRR3721383	size fractionation	3 day after treatment (DAT)	Glenlea	GSM2214281	Light	Rep2
SRR3721382	size fractionation	3 day after treatment (DAT)	Glenlea	GSM2214280	Heat	Rep2
SRR3721381	size fractionation	3 day after treatment (DAT)	Glenlea	GSM2214279	Control	Rep2
SRR3721380	size fractionation	3 day after treatment (DAT)	Glenlea	GSM2214278	UV	Rep1
SRR3721379	size fractionation	3 day after treatment (DAT)	Glenlea	GSM2214277	Light	Rep1
SRR3721378	size fractionation	3 day after treatment (DAT)	Glenlea	GSM2214276	Heat	Rep1
SRR3721377	size fractionation	3 day after treatment (DAT)	Glenlea	GSM2214275	Control	Rep1
SRR3721376	size fractionation	2 day after treatment (DAT)	Glenlea	GSM2214274	UV	Rep3
SRR3721375	size fractionation	2 day after treatment (DAT)	Glenlea	GSM2214273	Light	Rep3
SRR3721374	size fractionation	2 day after treatment (DAT)	Glenlea	GSM2214272	Heat	Rep3
SRR3721373	size fractionation	2 day after treatment (DAT)	Glenlea	GSM2214271	Control	Rep3
SRR3721372	size fractionation	2 day after treatment (DAT)	Glenlea	GSM2214270	UV	Rep2
SRR3721371	size fractionation	2 day after treatment (DAT)	Glenlea	GSM2214269	Light	Rep2
SRR3721370	size fractionation	2 day after treatment (DAT)	Glenlea	GSM2214268	Heat	Rep2
SRR3721369	size fractionation	2 day after treatment (DAT)	Glenlea	GSM2214267	Control	Rep2
SRR3721368	size fractionation	2 day after treatment (DAT)	Glenlea	GSM2214266	UV	Rep1
SRR3721367	size fractionation	2 day after treatment (DAT)	Glenlea	GSM2214265	Light	Rep1
SRR3721366	size fractionation	2 day after treatment (DAT)	Glenlea	GSM2214264	Heat	Rep1
SRR3721365	size fractionation	2 day after treatment (DAT)	Glenlea	GSM2214263	Control	Rep1
SRR3721364	size fractionation	1 day after treatment (DAT)	Glenlea	GSM2214262	UV	Rep3
SRR3721363	size fractionation	1 day after treatment (DAT)	Glenlea	GSM2214261	Light	Rep3
SRR3721362	size fractionation	1 day after treatment (DAT)	Glenlea	GSM2214260	Heat	Rep3
SRR3721361	size fractionation	1 day after treatment (DAT)	Glenlea	GSM2214259	Control	Rep3
SRR3721360	size fractionation	1 day after treatment (DAT)	Glenlea	GSM2214258	UV	Rep2
SRR3721359	size fractionation	1 day after treatment (DAT)	Glenlea	GSM2214257	Light	Rep2
SRR3721358	size fractionation	1 day after treatment (DAT)	Glenlea	GSM2214256	Heat	Rep2
SRR3721357	size fractionation	1 day after treatment (DAT)	Glenlea	GSM2214255	Control	Rep2
SRR3721356	size fractionation	1 day after treatment (DAT)	Glenlea	GSM2214254	UV	Rep1
SRR3721355	size fractionation	1 day after treatment (DAT)	Glenlea	GSM2214253	Light	Rep1
SRR3721354	size fractionation	1 day after treatment (DAT)	Glenlea	GSM2214252	Heat	Rep1
SRR3721353	size fractionation	1 day after treatment (DAT)	Glenlea	GSM2214251	Control	Rep1
SRR3721352	size fractionation	0 day after treatment (DAT)	Glenlea	GSM2214250	UV	Rep3
SRR3721351	size fractionation	0 day after treatment (DAT)	Glenlea	GSM2214249	Light	Rep3
SRR3721350	size fractionation	0 day after treatment (DAT)	Glenlea	GSM2214248	Heat	Rep3
SRR3721349	size fractionation	0 day after treatment (DAT)	Glenlea	GSM2214247	Control	Rep3
SRR3721348	size fractionation	0 day after treatment (DAT)	Glenlea	GSM2214246	UV	Rep2
SRR3721347	size fractionation	0 day after treatment (DAT)	Glenlea	GSM2214245	Light	Rep2
SRR3721346	size fractionation	0 day after treatment (DAT)	Glenlea	GSM2214244	Heat	Rep2
SRR3721345	size fractionation	0 day after treatment (DAT)	Glenlea	GSM2214243	Control	Rep2
SRR3721344	size fractionation	0 day after treatment (DAT)	Glenlea	GSM2214242	UV	Rep1
SRR3721343	size fractionation	0 day after treatment (DAT)	Glenlea	GSM2214241	Light	Rep1
SRR3721342	size fractionation	0 day after treatment (DAT)	Glenlea	GSM2214240	Heat	Rep1
SRR3721341	size fractionation	0 day after treatment (DAT)	Glenlea	GSM2214239	Control	Rep1

Run	LibrarySelection	Stage	Tissue	Cultivar	Sample Name	geo_loc_name
SRR3144539	size fractionation	after 15 days culture derived from immature embryo	callus	Zhoumai18	IME15 sRNA library	China: Henan Agricultural University, Zhengzhou
SRR3144538	size fractionation	after 6 days culture derived from immature embryo	callus	Zhoumai18	IME6 sRNA library	China: Henan Agricultural University, Zhengzhou
SRR3144523	size fractionation	after 3 days culture derived from immature embryo	callus	Zhoumai18	IME3 sRNA library	China: Henan Agricultural University, Zhengzhou
SRR3144511	size fractionation	after 6 days culture dereved from mature embryo	callus	Zhoumai 18	ME6 sRNA library	China: Henan Agricultural University, Zhengzhou
SRR3140978	size fractionation	after15 days culture derived from mature embryo	wheat callus	Zhoumai 18	ME15 sRNA library	China: Henan Agricultural University, Zhengzhou
SRR3140846	size fractionation	after 3 days culture dereved from mature embryo	callus	Zhoumai 18	ME3 sRNA library	China: Henan Agricultural University, Zhengzhou

Experiment Accession	Run	LibrarySelection	Age	Tissue	Cultivar	Sample Name	geo_loc_name
SRX1548275	SRR3151453 SRR3151454	size fractionation	30 days	grain	Spelta	I_Spelta_30D	Hungary
SRX1548274	SRR3151451 SRR3151452	size fractionation	20 days	grain	Spelta	I_Spelta_20D	Hungary
SRX1548273	SRR3151449 SRR3151450	size fractionation	10 days	grain	Spelta	I_Spelta_10D	Hungary
SRX1548272	SRR3151447 SRR3151448	size fractionation	30 days	grain	Bankuti lines B52	I_B52_30D	Hungary
SRX1548271	SRR3151445 SRR3151446	size fractionation	20 days	grain	Bankuti lines B52	I_B52_20D	Hungary
SRX1548269	SRR3151443 SRR3151444	size fractionation	10 days	grain	Bankuti lines B52	I_B52_10D	Hungary
SRX1548268	SRR3151441 SRR3151442	size fractionation	30 days	grain	Bankuti lines B35	I_B35_30D	Hungary
SRX1548266	SRR3151439 SRR3151440	size fractionation	20 days	grain	Bankuti lines B35	I_B35_20D	Hungary
SRX1548265	SRR3151437 SRR3151438	size fractionation	10 days	grain	Bankuti lines B35	I_B35_10D	Hungary
SRX1548199	SRR3151435 SRR3151436	RANDOM	30 days	grain	Spelta	T_Spelta_30D	Hungary
SRX1548198	SRR3151433 SRR3151434	RANDOM	20 days	grain	Spelta	T_Spelta_20D	Hungary
SRX1548192	SRR3151431 SRR3151432	RANDOM	10 days	grain	Spelta	T_Spelta_10D	Hungary
SRX1548177	SRR3151429 SRR3151430	RANDOM	30 days	grain	Bankuti lines B52	T_B52_30D	Hungary
SRX1548164	SRR3151427 SRR3151428	RANDOM	20 days	grain	Bankuti lines B52	T_B52_20D	Hungary
SRX1548163	SRR3151425 SRR3151426	RANDOM	10 days	grain	Bankuti lines B52	T_B52_10D	Hungary
SRX1548152	SRR3144555 SRR3151424	RANDOM	30 days	grain	Bankuti lines B35	T_B35_30D	Hungary
SRX1548148	SRR3144553 SRR3144554	RANDOM	20 days	grain	Bankuti lines B35	T_B35_20D	Hungary
SRX1546448	SRR3144551 SRR3144552	RANDOM	10 days	grain	Bankuti lines B35	T_B35_10D	Hungary

Run	LibrarySelection	Library Name	Stage	Tissue	Cultivar	Sample Name	geo_loc_name	Treatment
SRR3136704	RANDOM	SKS-S	seed germination	Shoot	HD-2967	Shoot tissue	India	Nitrate stress
SRR2146991	RANDOM	SKS-N	Seedling stage	Root	HD-2967	Root tisue	India	Nitrate stress
SRR2146992	RANDOM	SKS-S	Seedling stage	Root	HD-2967	Root tisue	India	Nitrate stress

Run	LibrarySelection	Age/Stage	Tissue	Cultivar	Sample Name
SRR1796322	size fractionation	28 days post anthesis	grain	Chinese Spring	GSM1606477
SRR1796321	size fractionation	21 days post anthesis	grain	Chinese Spring	GSM1606476
SRR1796320	size fractionation	14 days post anthesis	grain	Chinese Spring	GSM1606475
SRR1796319	size fractionation	7 days post anthesis	grain	Chinese Spring	GSM1606474

Run	LibrarySelection	Stage	Tissue	Cultivar	Sample Name
SRR1728653	size fractionation	two-leaf stage	leaf	Zhengyin1	T2 sRNA library
SRR1728566	size fractionation	two-leaf stage	leaf	Zhengyin1	C2 sRNA library
SRR1727004	size fractionation	two-leaf stage	leaf	Hanxuan10	C1
SRR1728309	size fractionation	two-leaf stage	leaf	Hanxuan 10	T1 sRNA library

Run	LibrarySelection	Library Name	Age	Tissue	Cultivar	Sample Name	geo_loc_name
SRR1646809	size fractionation	R-PImi_data.fastq	10 days	leaf	HD2329+Lr24	Small RNA Wheat HD2329+Lr24 infected with Puccinia triticina (R-PImi)	India
SRR1646808	size fractionation	R-Mmi_data.fastq	10 days	leaf	HD2329+Lr24	Small RNA Wheat HD2329+Lr24 mock inoculated (R-Mmi)	India
SRR1646807	size fractionation	S-PImi_data.fastq	10 days	leaf	HD2329	Small RNA Wheat HD2329 infected with Puccinia triticina (S-PImi)	India
SRR1646806	size fractionation	Small RNA Wheat HD2329 mock inoculated (S-Mmi)	10 days	leaf	HD2329	Small RNA Wheat HD2329 mock inoculated (S-Mmi)	India

Experiment Accession	Run	Cultivar	Sample Name
SRX500281	SRR1203861 SRR1203865 SRR1203916 SRR1203917	wheat	Identification of Novel miRNAs and miRNA Expression Profiling in Wheat Hybrid Necrosis

Run	LibrarySelection	Tissue	Cultivar	Sample Name
SRR1196023	size fractionation	flag leaves	Chinese Spring	FL
SRR1196045	size fractionation	grain of 15 days after pollination	Chinese Spring	GRA15
SRR1196029	size fractionation	grain of 8 days after pollination	Chinese Spring	GRA8
SRR1196022	size fractionation	10-15 mm young spikes	Chinese Spring	YS15
SRR1195944	size fractionation	0-5 mm young spikes	Chinese Spring	YS5
SRR1195282	size fractionation	stems in the jointing stage	Chinese Spring	SJ
SRR1195281	size fractionation	seedling root	Chinese Spring	SR
SRR1195280	size fractionation	seedling leaf	Chinese Spring	seedling leaf
SRR1195279	size fractionation	seedling shoot	Chinese Spring	SH
SRR1195025	size fractionation	embryo of germinating seed embryos	Chinese Spring	GSE
SRR1195024	size fractionation	grains	Chinese Spring	dry grains

Run	LibrarySelection	Sample Name
SRR800158	RANDOM PCR	HD2985_treated
SRR800157	RANDOM	HD2985_control

Run	LibrarySelection	Genotype	Tissue	sub_species	Sample Name	Treatment
SRR14128339	size fractionation	DBA Aurora	Developing grain tissue	durum	GSM5222605	Heat stress group
SRR14128338	size fractionation	DBA Aurora	Developing grain tissue	durum	GSM5222604	Control group
SRR14128337	size fractionation	DBA Aurora	Developing grain tissue	durum	GSM5222603	Heat stress group
SRR14128336	size fractionation	DBA Aurora	Developing grain tissue	durum	GSM5222602	Control group
SRR14128335	size fractionation	DBA Aurora	Flag leaf tissue	durum	GSM5222601	Heat stress group
SRR14128334	size fractionation	DBA Aurora	Flag leaf tissue	durum	GSM5222600	Control group
SRR14128333	size fractionation	DBA Aurora	Flag leaf tissue	durum	GSM5222599	Heat stress group
SRR14128332	size fractionation	DBA Aurora	Flag leaf tissue	durum	GSM5222598	Control group

Run	LibrarySelection	Genotype	sub_species	Sample Name	Treatment
SRR13833550	size fractionation	L6 (UAD1301020-8)	durum	GSM5128902	Nitrogen starvation group
SRR13833549	size fractionation	L6 (UAD1301020-8)	durum	GSM5128901	Control group
SRR13833548	size fractionation	L6 (UAD1301020-8)	durum	GSM5128900	Nitrogen starvation group
SRR13833547	size fractionation	L6 (UAD1301020-8)	durum	GSM5128899	Control group
SRR13833546	size fractionation	DBA Aurora	durum	GSM5128898	Nitrogen starvation group
SRR13833545	size fractionation	DBA Aurora	durum	GSM5128897	Control group
SRR13833544	size fractionation	DBA Aurora	durum	GSM5128896	Nitrogen starvation group
SRR13833543	size fractionation	DBA Aurora	durum	GSM5128895	Control group

Run	LibrarySelection	Genotype	sub_species	Sample Name	Treatment
SRR13114338	size fractionation	DBA Artemis	durum	GSM4929666	Water-deficit stress group
SRR13114337	size fractionation	DBA Artemis	durum	GSM4929665	Control group
SRR13114336	size fractionation	DBA Artemis	durum	GSM4929664	Water-deficit stress group
SRR13114335	size fractionation	DBA Artemis	durum	GSM4929663	Control group
SRR13114334	size fractionation	DBA Artemis	durum	GSM4929662	Water-deficit stress group
SRR13114333	size fractionation	DBA Artemis	durum	GSM4929661	Control group
SRR13114332	size fractionation	DBA Artemis	durum	GSM4929660	Water-deficit stress group
SRR13114331	size fractionation	DBA Artemis	durum	GSM4929659	Control group

Run	LibrarySelection	Genotype	sub_species	Sample Name	Treatment	Replicate
SRR12164786	size fractionation	-	durum	GSM4658665	-	Rep1
SRR12164785	size fractionation	-	durum	GSM4658664	-	Rep2
SRR12164784	size fractionation	-	durum	GSM4658663	-	Rep1
SRR12164783	size fractionation	L6 (Stres-sensitive)	durum	GSM4658662	Control group (CG)	Rep3
SRR12164782	size fractionation	L6 (Stres-sensitive)	durum	GSM4658661	Control group (CG)	Rep2
SRR12164781	size fractionation	L6 (Stres-sensitive)	durum	GSM4658660	Control group (CG)	Rep1
SRR12164780	size fractionation	L6 (Stres-sensitive)	durum	GSM4658659	Water-deficit plus heat stress (WH)	Rep3
SRR12164779	size fractionation	L6 (Stres-sensitive)	durum	GSM4658658	Water-deficit plus heat stress (WH)	Rep2
SRR12164778	size fractionation	L6 (Stres-sensitive)	durum	GSM4658657	Water-deficit plus heat stress (WH)	Rep1
SRR12164777	size fractionation	L6 (Stres-sensitive)	durum	GSM4658656	Heat stress (HS)	Rep3
SRR12164776	size fractionation	L6 (Stres-sensitive)	durum	GSM4658655	Heat stress (HS)	Rep2
SRR12164775	size fractionation	L6 (Stres-sensitive)	durum	GSM4658654	Heat stress (HS)	Rep1
SRR12164774	size fractionation	L6 (Stres-sensitive)	durum	GSM4658653	Water-deficit stress (WS)	Rep3
SRR12164773	size fractionation	L6 (Stres-sensitive)	durum	GSM4658652	Water-deficit stress (WS)	Rep2
SRR12164772	size fractionation	L6 (Stres-sensitive)	durum	GSM4658651	Water-deficit stress (WS)	Rep1
SRR12164771	size fractionation	L6 (Stres-sensitive)	durum	GSM4658650	Control group (CG)	Rep3
SRR12164770	size fractionation	L6 (Stres-sensitive)	durum	GSM4658649	Control group (CG)	Rep2
SRR12164769	size fractionation	L6 (Stres-sensitive)	durum	GSM4658648	Control group (CG)	Rep1
SRR12164768	size fractionation	L6 (Stres-sensitive)	durum	GSM4658647	Water-deficit plus heat stress (WH)	Rep3
SRR12164767	size fractionation	L6 (Stres-sensitive)	durum	GSM4658646	Water-deficit plus heat stress (WH)	Rep2
SRR12164766	size fractionation	L6 (Stres-sensitive)	durum	GSM4658645	Water-deficit plus heat stress (WH)	Rep1
SRR12164765	size fractionation	L6 (Stres-sensitive)	durum	GSM4658644	Heat stress (HS)	Rep3
SRR12164764	size fractionation	L6 (Stres-sensitive)	durum	GSM4658643	Heat stress (HS)	Rep2
SRR12164763	size fractionation	L6 (Stres-sensitive)	durum	GSM4658642	Heat stress (HS)	Rep1
SRR12164762	size fractionation	L6 (Stres-sensitive)	durum	GSM4658641	Water-deficit stress (WS)	Rep3
SRR12164761	size fractionation	L6 (Stres-sensitive)	durum	GSM4658640	Water-deficit stress (WS)	Rep2
SRR12164760	size fractionation	L6 (Stres-sensitive)	durum	GSM4658639	Water-deficit stress (WS)	Rep1
SRR12164759	size fractionation	L6 (Stres-sensitive)	durum	GSM4658638	Control group (CG)	Rep3
SRR12164758	size fractionation	L6 (Stres-sensitive)	durum	GSM4658637	Control group (CG)	Rep2
SRR12164757	size fractionation	L6 (Stres-sensitive)	durum	GSM4658636	Control group (CG)	Rep1
SRR12164756	size fractionation	L6 (Stres-sensitive)	durum	GSM4658635	Water-deficit plus heat stress (WH)	Rep3
SRR12164755	size fractionation	L6 (Stres-sensitive)	durum	GSM4658634	Water-deficit plus heat stress (WH)	Rep2
SRR12164754	size fractionation	L6 (Stres-sensitive)	durum	GSM4658633	Water-deficit plus heat stress (WH)	Rep1
SRR12164753	size fractionation	L6 (Stres-sensitive)	durum	GSM4658632	Heat stress (HS)	Rep3
SRR12164752	size fractionation	L6 (Stres-sensitive)	durum	GSM4658631	Heat stress (HS)	Rep2
SRR12164751	size fractionation	L6 (Stres-sensitive)	durum	GSM4658630	Heat stress (HS)	Rep1
SRR12164750	size fractionation	L6 (Stres-sensitive)	durum	GSM4658629	Water-deficit stress (WS)	Rep3
SRR12164749	size fractionation	L6 (Stres-sensitive)	durum	GSM4658628	Water-deficit stress (WS)	Rep2
SRR12164748	size fractionation	L6 (Stres-sensitive)	durum	GSM4658627	Water-deficit stress (WS)	Rep1
SRR12164747	size fractionation	L6 (Stres-sensitive)	durum	GSM4658626	Control group (CG)	Rep3
SRR12164746	size fractionation	L6 (Stres-sensitive)	durum	GSM4658625	Control group (CG)	Rep2
SRR12164745	size fractionation	L6 (Stres-sensitive)	durum	GSM4658624	Control group (CG)	Rep1
SRR12164744	size fractionation	L6 (Stres-sensitive)	durum	GSM4658623	Water-deficit plus heat stress (WH)	Rep3
SRR12164743	size fractionation	L6 (Stres-sensitive)	durum	GSM4658622	Water-deficit plus heat stress (WH)	Rep2
SRR12164742	size fractionation	L6 (Stres-sensitive)	durum	GSM4658621	Water-deficit plus heat stress (WH)	Rep1
SRR12164741	size fractionation	L6 (Stres-sensitive)	durum	GSM4658620	Heat stress (HS)	Rep3
SRR12164740	size fractionation	L6 (Stres-sensitive)	durum	GSM4658619	Heat stress (HS)	Rep2
SRR12164739	size fractionation	L6 (Stres-sensitive)	durum	GSM4658618	Heat stress (HS)	Rep1
SRR12164738	size fractionation	L6 (Stres-sensitive)	durum	GSM4658617	Water-deficit stress (WS)	Rep3
SRR12164737	size fractionation	L6 (Stres-sensitive)	durum	GSM4658616	Water-deficit stress (WS)	Rep2
SRR12164736	size fractionation	L6 (Stres-sensitive)	durum	GSM4658615	Water-deficit stress (WS)	Rep1
SRR12164735	size fractionation	L6 (Stres-sensitive)	durum	GSM4658614	Control group (CG)	Rep3
SRR12164734	size fractionation	L6 (Stres-sensitive)	durum	GSM4658613	Control group (CG)	Rep2
SRR12164733	size fractionation	L6 (Stres-sensitive)	durum	GSM4658612	Control group (CG)	Rep1
SRR12164732	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658611	Water-deficit plus heat stress (WH)	Rep3
SRR12164731	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658610	Water-deficit plus heat stress (WH)	Rep2
SRR12164730	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658609	Water-deficit plus heat stress (WH)	Rep1
SRR12164729	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658608	Heat stress (HS)	Rep3
SRR12164728	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658607	Heat stress (HS)	Rep2
SRR12164727	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658606	Heat stress (HS)	Rep1
SRR12164726	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658605	Water-deficit stress (WS)	Rep3
SRR12164725	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658604	Water-deficit stress (WS)	Rep2
SRR12164724	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658603	Water-deficit stress (WS)	Rep1
SRR12164723	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658602	Control group (CG)	Rep3
SRR12164722	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658601	Control group (CG)	Rep2
SRR12164721	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658600	Control group (CG)	Rep1
SRR12164720	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658599	Water-deficit plus heat stress (WH)	Rep3
SRR12164719	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658598	Water-deficit plus heat stress (WH)	Rep2
SRR12164718	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658597	Water-deficit plus heat stress (WH)	Rep1
SRR12164717	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658596	Heat stress (HS)	Rep3
SRR12164716	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658595	Heat stress (HS)	Rep2
SRR12164715	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658594	Heat stress (HS)	Rep1
SRR12164714	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658593	Water-deficit stress (WS)	Rep3
SRR12164713	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658592	Water-deficit stress (WS)	Rep2
SRR12164712	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658591	Water-deficit stress (WS)	Rep1
SRR12164711	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658590	Control group (CG)	Rep3
SRR12164710	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658589	Control group (CG)	Rep2
SRR12164709	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658588	Control group (CG)	Rep1
SRR12164708	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658587	Water-deficit plus heat stress (WH)	Rep3
SRR12164707	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658586	Water-deficit plus heat stress (WH)	Rep2
SRR12164706	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658585	Water-deficit plus heat stress (WH)	Rep1
SRR12164705	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658584	Heat stress (HS)	Rep3
SRR12164704	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658583	Heat stress (HS)	Rep2
SRR12164703	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658582	Heat stress (HS)	Rep1
SRR12164702	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658581	Water-deficit stress (WS)	Rep3
SRR12164701	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658580	Water-deficit stress (WS)	Rep2
SRR12164700	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658579	Water-deficit stress (WS)	Rep1
SRR12164699	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658578	Control group (CG)	Rep3
SRR12164698	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658577	Control group (CG)	Rep2
SRR12164697	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658576	Control group (CG)	Rep1
SRR12164696	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658575	Water-deficit plus heat stress (WH)	Rep3
SRR12164695	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658574	Water-deficit plus heat stress (WH)	Rep2
SRR12164694	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658573	Water-deficit plus heat stress (WH)	Rep1
SRR12164693	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658572	Heat stress (HS)	Rep3
SRR12164692	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658571	Heat stress (HS)	Rep2
SRR12164691	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658570	Heat stress (HS)	Rep1
SRR12164690	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658569	Water-deficit stress (WS)	Rep3
SRR12164689	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658568	Water-deficit stress (WS)	Rep2
SRR12164688	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658567	Water-deficit stress (WS)	Rep1
SRR12164687	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658566	Control group (CG)	Rep3
SRR12164686	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658565	Control group (CG)	Rep2
SRR12164685	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658564	Control group (CG)	Rep1
SRR12164684	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658563	Water-deficit plus heat stress (WH)	Rep3
SRR12164683	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658562	Water-deficit plus heat stress (WH)	Rep2
SRR12164682	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658561	Water-deficit plus heat stress (WH)	Rep1
SRR12164681	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658560	Heat stress (HS)	Rep3
SRR12164680	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658559	Heat stress (HS)	Rep2
SRR12164679	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658558	Heat stress (HS)	Rep1
SRR12164678	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658557	Water-deficit stress (WS)	Rep3
SRR12164677	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658556	Water-deficit stress (WS)	Rep2
SRR12164676	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658555	Water-deficit stress (WS)	Rep1
SRR12164675	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658554	Control group (CG)	Rep3
SRR12164790	size fractionation	L6 (Stres-sensitive)	durum	GSM4658669	Water-deficit plus heat stress (WH)	Rep2
SRR12164789	size fractionation	L6 (Stres-sensitive)	durum	GSM4658668	Water-deficit plus heat stress (WH)	Rep1
SRR12164788	size fractionation	L6 (Stres-sensitive)	durum	GSM4658667	Heat stress (HS)	Rep3
SRR12164787	size fractionation	-	durum	GSM4658666	-	Rep2
SRR12164674	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658553	Control group (CG)	Rep2
SRR12164673	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4658552	Control group (CG)	Rep1

Run	LibrarySelection	Genotype	sub_species	Sample Name	Treatment	Replicate
SRR12067466	size fractionation	L6 (Stres-sensitive)	durum	GSM4630931	Water-deficit plus heat stress (WH)	Rep3
SRR12067465	size fractionation	L6 (Stres-sensitive)	durum	GSM4630930	Water-deficit plus heat stress (WH)	Rep2
SRR12067464	size fractionation	L6 (Stres-sensitive)	durum	GSM4630929	Water-deficit plus heat stress (WH)	Rep1
SRR12067463	size fractionation	L6 (Stres-sensitive)	durum	GSM4630928	Heat stress (HS)	Rep3
SRR12067462	size fractionation	L6 (Stres-sensitive)	durum	GSM4630927	Heat stress (HS)	Rep2
SRR12067461	size fractionation	L6 (Stres-sensitive)	durum	GSM4630926	Heat stress (HS)	Rep1
SRR12067460	size fractionation	L6 (Stres-sensitive)	durum	GSM4630925	Water-deficit stress (WS)	Rep3
SRR12067459	size fractionation	L6 (Stres-sensitive)	durum	GSM4630924	Water-deficit stress (WS)	Rep2
SRR12067458	size fractionation	L6 (Stres-sensitive)	durum	GSM4630923	Water-deficit stress (WS)	Rep1
SRR12067457	size fractionation	L6 (Stres-sensitive)	durum	GSM4630922	Control group (CG)	Rep3
SRR12067456	size fractionation	L6 (Stres-sensitive)	durum	GSM4630921	Control group (CG)	Rep2
SRR12067455	size fractionation	L6 (Stres-sensitive)	durum	GSM4630920	Control group (CG)	Rep1
SRR12067454	size fractionation	L6 (Stres-sensitive)	durum	GSM4630919	Water-deficit plus heat stress (WH)	Rep3
SRR12067453	size fractionation	L6 (Stres-sensitive)	durum	GSM4630918	Water-deficit plus heat stress (WH)	Rep2
SRR12067452	size fractionation	L6 (Stres-sensitive)	durum	GSM4630917	Water-deficit plus heat stress (WH)	Rep1
SRR12067451	size fractionation	L6 (Stres-sensitive)	durum	GSM4630916	Heat stress (HS)	Rep3
SRR12067450	size fractionation	L6 (Stres-sensitive)	durum	GSM4630915	Heat stress (HS)	Rep2
SRR12067449	size fractionation	L6 (Stres-sensitive)	durum	GSM4630914	Heat stress (HS)	Rep1
SRR12067448	size fractionation	L6 (Stres-sensitive)	durum	GSM4630913	Water-deficit stress (WS)	Rep3
SRR12067447	size fractionation	L6 (Stres-sensitive)	durum	GSM4630912	Water-deficit stress (WS)	Rep2
SRR12067446	size fractionation	L6 (Stres-sensitive)	durum	GSM4630911	Water-deficit stress (WS)	Rep1
SRR12067445	size fractionation	L6 (Stres-sensitive)	durum	GSM4630910	Control group (CG)	Rep3
SRR12067444	size fractionation	L6 (Stres-sensitive)	durum	GSM4630909	Control group (CG)	Rep2
SRR12067443	size fractionation	L6 (Stres-sensitive)	durum	GSM4630908	Control group (CG)	Rep1
SRR12067442	size fractionation	L6 (Stres-sensitive)	durum	GSM4630907	Water-deficit plus heat stress (WH)	Rep3
SRR12067441	size fractionation	L6 (Stres-sensitive)	durum	GSM4630906	Water-deficit plus heat stress (WH)	Rep2
SRR12067440	size fractionation	L6 (Stres-sensitive)	durum	GSM4630905	Water-deficit plus heat stress (WH)	Rep1
SRR12067439	size fractionation	L6 (Stres-sensitive)	durum	GSM4630904	Heat stress (HS)	Rep3
SRR12067438	size fractionation	L6 (Stres-sensitive)	durum	GSM4630903	Heat stress (HS)	Rep2
SRR12067437	size fractionation	L6 (Stres-sensitive)	durum	GSM4630902	Heat stress (HS)	Rep1
SRR12067436	size fractionation	L6 (Stres-sensitive)	durum	GSM4630901	Water-deficit stress (WS)	Rep3
SRR12067435	size fractionation	L6 (Stres-sensitive)	durum	GSM4630900	Water-deficit stress (WS)	Rep2
SRR12067434	size fractionation	L6 (Stres-sensitive)	durum	GSM4630899	Water-deficit stress (WS)	Rep1
SRR12067433	size fractionation	L6 (Stres-sensitive)	durum	GSM4630898	Control group (CG)	Rep3
SRR12067432	size fractionation	L6 (Stres-sensitive)	durum	GSM4630897	Control group (CG)	Rep2
SRR12067431	size fractionation	L6 (Stres-sensitive)	durum	GSM4630896	Control group (CG)	Rep1
SRR12067430	size fractionation	L6 (Stres-sensitive)	durum	GSM4630895	Water-deficit plus heat stress (WH)	Rep3
SRR12067429	size fractionation	L6 (Stres-sensitive)	durum	GSM4630894	Water-deficit plus heat stress (WH)	Rep2
SRR12067428	size fractionation	L6 (Stres-sensitive)	durum	GSM4630893	Water-deficit plus heat stress (WH)	Rep1
SRR12067427	size fractionation	L6 (Stres-sensitive)	durum	GSM4630892	Heat stress (HS)	Rep3
SRR12067426	size fractionation	L6 (Stres-sensitive)	durum	GSM4630891	Heat stress (HS)	Rep2
SRR12067425	size fractionation	L6 (Stres-sensitive)	durum	GSM4630890	Heat stress (HS)	Rep1
SRR12067424	size fractionation	L6 (Stres-sensitive)	durum	GSM4630889	Water-deficit stress (WS)	Rep3
SRR12067423	size fractionation	L6 (Stres-sensitive)	durum	GSM4630888	Water-deficit stress (WS)	Rep2
SRR12067422	size fractionation	L6 (Stres-sensitive)	durum	GSM4630887	Water-deficit stress (WS)	Rep1
SRR12067421	size fractionation	L6 (Stres-sensitive)	durum	GSM4630886	Control group (CG)	Rep3
SRR12067420	size fractionation	L6 (Stres-sensitive)	durum	GSM4630885	Control group (CG)	Rep2
SRR12067419	size fractionation	L6 (Stres-sensitive)	durum	GSM4630884	Control group (CG)	Rep1
SRR12067418	size fractionation	L6 (Stres-sensitive)	durum	GSM4630883	Water-deficit plus heat stress (WH)	Rep3
SRR12067417	size fractionation	L6 (Stres-sensitive)	durum	GSM4630882	Water-deficit plus heat stress (WH)	Rep2
SRR12067416	size fractionation	L6 (Stres-sensitive)	durum	GSM4630881	Water-deficit plus heat stress (WH)	Rep1
SRR12067415	size fractionation	L6 (Stres-sensitive)	durum	GSM4630880	Heat stress (HS)	Rep3
SRR12067414	size fractionation	L6 (Stres-sensitive)	durum	GSM4630879	Heat stress (HS)	Rep2
SRR12067413	size fractionation	L6 (Stres-sensitive)	durum	GSM4630878	Heat stress (HS)	Rep1
SRR12067412	size fractionation	L6 (Stres-sensitive)	durum	GSM4630877	Water-deficit stress (WS)	Rep3
SRR12067411	size fractionation	L6 (Stres-sensitive)	durum	GSM4630876	Water-deficit stress (WS)	Rep2
SRR12067410	size fractionation	L6 (Stres-sensitive)	durum	GSM4630875	Water-deficit stress (WS)	Rep1
SRR12067409	size fractionation	L6 (Stres-sensitive)	durum	GSM4630874	Control group (CG)	Rep3
SRR12067408	size fractionation	L6 (Stres-sensitive)	durum	GSM4630873	Control group (CG)	Rep2
SRR12067407	size fractionation	L6 (Stres-sensitive)	durum	GSM4630872	Control group (CG)	Rep1
SRR12067406	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630871	Water-deficit plus heat stress (WH)	Rep3
SRR12067405	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630870	Water-deficit plus heat stress (WH)	Rep2
SRR12067404	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630869	Water-deficit plus heat stress (WH)	Rep1
SRR12067403	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630868	Heat stress (HS)	Rep3
SRR12067402	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630867	Heat stress (HS)	Rep2
SRR12067401	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630866	Heat stress (HS)	Rep1
SRR12067400	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630865	Water-deficit stress (WS)	Rep3
SRR12067399	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630864	Water-deficit stress (WS)	Rep2
SRR12067398	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630863	Water-deficit stress (WS)	Rep1
SRR12067397	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630862	Control group (CG)	Rep3
SRR12067396	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630861	Control group (CG)	Rep2
SRR12067395	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630860	Control group (CG)	Rep1
SRR12067394	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630859	Water-deficit plus heat stress (WH)	Rep3
SRR12067393	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630858	Water-deficit plus heat stress (WH)	Rep2
SRR12067392	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630857	Water-deficit plus heat stress (WH)	Rep1
SRR12067391	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630856	Heat stress (HS)	Rep3
SRR12067390	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630855	Heat stress (HS)	Rep2
SRR12067389	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630854	Heat stress (HS)	Rep1
SRR12067388	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630853	Water-deficit stress (WS)	Rep3
SRR12067387	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630852	Water-deficit stress (WS)	Rep2
SRR12067386	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630851	Water-deficit stress (WS)	Rep1
SRR12067385	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630850	Control group (CG)	Rep3
SRR12067384	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630849	Control group (CG)	Rep2
SRR12067383	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630848	Control group (CG)	Rep1
SRR12067382	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630847	Water-deficit plus heat stress (WH)	Rep3
SRR12067381	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630846	Water-deficit plus heat stress (WH)	Rep2
SRR12067380	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630845	Water-deficit plus heat stress (WH)	Rep1
SRR12067379	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630844	Heat stress (HS)	Rep3
SRR12067378	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630843	Heat stress (HS)	Rep2
SRR12067377	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630842	Heat stress (HS)	Rep1
SRR12067376	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630841	Water-deficit stress (WS)	Rep3
SRR12067375	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630840	Water-deficit stress (WS)	Rep2
SRR12067374	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630839	Water-deficit stress (WS)	Rep1
SRR12067373	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630838	Control group (CG)	Rep3
SRR12067372	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630837	Control group (CG)	Rep2
SRR12067371	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630836	Control group (CG)	Rep1
SRR12067370	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630835	Water-deficit plus heat stress (WH)	Rep3
SRR12067369	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630834	Water-deficit plus heat stress (WH)	Rep2
SRR12067368	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630833	Water-deficit plus heat stress (WH)	Rep1
SRR12067367	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630832	Heat stress (HS)	Rep3
SRR12067366	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630831	Heat stress (HS)	Rep2
SRR12067365	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630830	Heat stress (HS)	Rep1
SRR12067364	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630829	Water-deficit stress (WS)	Rep3
SRR12067363	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630828	Water-deficit stress (WS)	Rep2
SRR12067362	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630827	Water-deficit stress (WS)	Rep1
SRR12067361	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630826	Control group (CG)	Rep3
SRR12067360	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630825	Control group (CG)	Rep2
SRR12067359	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630824	Control group (CG)	Rep1
SRR12067358	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630823	Water-deficit plus heat stress (WH)	Rep3
SRR12067357	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630822	Water-deficit plus heat stress (WH)	Rep2
SRR12067356	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630821	Water-deficit plus heat stress (WH)	Rep1
SRR12067355	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630820	Heat stress (HS)	Rep3
SRR12067354	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630819	Heat stress (HS)	Rep2
SRR12067353	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630818	Heat stress (HS)	Rep1
SRR12067352	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630817	Water-deficit stress (WS)	Rep3
SRR12067351	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630816	Water-deficit stress (WS)	Rep2
SRR12067350	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630815	Water-deficit stress (WS)	Rep1
SRR12067349	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630814	Control group (CG)	Rep3
SRR12067348	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630813	Control group (CG)	Rep2
SRR12067347	size fractionation	DBA Aurora (Stress-tolerant)	durum	GSM4630812	Control group (CG)	Rep1

Run	LibrarySelection	Genotype	Tissue	sub_species	Sample Name	Treatment
SRR10870722	size fractionation	Line 6 (UAD1301020-8)	shoot	durum	GSM4259761	Water-deficit and heat stress
SRR10870721	size fractionation	Line 6 (UAD1301020-8)	shoot	durum	GSM4259760	Control
SRR10870720	size fractionation	DBA Aurora	shoot	durum	GSM4259759	Water-deficit and heat stress
SRR10870719	size fractionation	DBA Aurora	shoot	durum	GSM4259758	Control

Run	Library Name	LibrarySelection	Tissue	sub_species	Cultivar	Sample Name	geo_loc_name	Treatment
SRR7226493	svevomicro9	RT-PCR	Grain	durum	Svevo	Svevo_miRNA_9	Italy	-
SRR7226494	svevomicro7	RT-PCR	Rachis + glumes Leaf Epicotile + shoot Shoot Rootlet	durum	Svevo	Svevo_miRNA_7	Italy	F. graminearum and F. culmorum inoculated spikes 36/72h or Zymoseptoria tritici Italian isolate inoculated seedlings 4h /1/2/9 d or Control spikes dd H2O 36/72h or control leaves ddH2O 4h / 1/2/9 d
SRR7226495	svevomicro8	RT-PCR	Shoot Root Leaf	durum	Svevo	Svevo_miRNA_8	Italy	1/4 Hoagland solution (HS) + 5mM KNO3 4/24/72 h / 7 d or 1/4 HS + K(H2PO4) 2mM 4/24/72 h / 7 d or 1/4 HS + 2.5 mM Mg(SO4) 4/24/72 h / 7 d or 1/4 HS + 100 µM Fe-EDTA 4/24/72 h / 7 d or 1/4 HS + 10mM (NH4)NO3 4/24/72 h / 7 d
SRR7226496	svevomicro6	RT-PCR	Coleoptile Root Culm node Spike Flag Leaf Glume + lemna Ovary + anther	durum	Svevo	Svevo_miRNA_6	Italy	-
SRR7226499	svevomicro5	RT-PCR	Leaf Root	durum	Svevo	Svevo_miRNA_5	Italy	60µM CdCl2/2 d or 10µM ABA/4h or 50µM GA3/4h
SRR7226500	svevomicro3	RT-PCR	Leaf Root	durum	Svevo	Svevo_miRNA_3	Italy	25°C /20°C 12h light/12h dark or Nutrient supply/control: control 1/4 strength Hoagland solution then replenished with dd H2O
SRR7226498	svevomicro4	RT-PCR	Leaf Root	durum	Svevo	Svevo_miRNA_4	Italy	1/4 Hoagland solution + K(H2PO4) 2mM 4/24/72 h / 7 d or 1/4 Hoagland solution + 10mM (NH4)NO3 4/24/72 h / 7 d or UV exposure: 3h first day/2h second day/2h third day + recovery 24h or 10mM H2O2 2/4h
SRR7226501	svevomicro1	RT-PCR	Leaf Root Coleoptyle Spike	durum	Svevo	Svevo_miRNA_1	Italy	3°C/1.5°C 12h light /12h dark /24 h or 36°C/ 4h or 37°C/24h ,37°C/24h + 45°C/1h, 37°C/24h + 45°C/1h + 24°C/3d
SRR7226497	svevomicro2	RT-PCR	Leaf Root	durum	Svevo	Svevo_miRNA_2	Italy	Drought/wounding 90 min/3h or 20% PEG 6000 3h/7h or 150mM NaCl 6h/24h

Run	Library Name	LibrarySelection	Stage	Tissue	sub_species	Cultivar	Sample Name	geo_loc_name	Treatment
SRR6649861	LIB_02	size fractionation	seediling	leaves	durum	Ciccio	LIB02_Ciccio_F0_sRNA	Italy	Nitrogen deprivation
SRR6649862	LIB_01	size fractionation	seediling	roots	durum	Ciccio	LIB01_Ciccio_R0_sRNA	Italy	Nitrogen deprivation
SRR6649863	LIB_04	size fractionation	seediling	leaves	durum	Ciccio	LIB04_Ciccio_F2_sRNA	Italy	-
SRR6649864	LIB_03	size fractionation	seediling	roots	durum	Ciccio	LIB03_Ciccio_R2_sRNA	Italy	-
SRR6649865	LIB_06	size fractionation	seediling	leaves	durum	Svevo	LIB06_Svevo_F0_sRNA	Italy	Nitrogen deprivation
SRR6649866	LIB_05	size fractionation	seediling	roots	durum	Svevo	LIB05_Svevo_R0_sRNA	Italy	Nitrogen deprivation
SRR6649867	LIB_08	size fractionation	seediling	leaves	durum	Svevo	LIB08_Svevo_F2_sRNA	Italy	-
SRR6649868	LIB_07	size fractionation	seediling	roots	durum	Svevo	LIB07_Svevo_R2_sRNA	Italy	-
SRR3607662	LIB_11	size fractionation	late milk	root,leaf,flag leaf,spike	durum	Svevo	LIBRARY 11 smallRNA from Triticum turgidum subsp. durum - Svevo (0 mM N)	Italy	Nitrogen deprivation
SRR3603231	LIB_09	size fractionation	late milk	root,leaf,flag leaf,spike	durum	Ciccio	LIBRARY 09 smallRNA from Triticum turgidum subsp. durum - Ciccio (0 mM N)	Italy	Nitrogen deprivation
SRR3147015	PRJNA310686	size fractionation	Late milk - Z77	small RNA pool from roots,leaves,flag leaves,spikes	durum	Svevo	Small RNA durum wheat LIBRARY 12	Italy	-
SRR3144594	Library 10 durum wheat Ciccio	RANDOM	Late milk - Z77	small RNA pool from roots,leaves,flag leaves,spikes	durum	Ciccio	Small RNA durum wheat LIBRARY 10	Italy	-

Experiment Accession	Run	LibrarySelection	Tissue	sub_species	variety_name	Sample Name	Treatment
SRX1042025	SRR2043911	size fractionation	Developing head (H)	durum	Tjilkuri	GSM1698216	Water deficit stress treatment group (WG)
SRX1042024	SRR2043909 SRR2043910	size fractionation	Developing head (H)	durum	Tjilkuri	GSM1698215	Water deficit stress treatment group (WG)
SRX1042023	SRR2043907 SRR2043908	size fractionation	Developing head (H)	durum	Tjilkuri	GSM1698214	Water deficit stress treatment group (WG)
SRX1042022	SRR2043905 SRR2043906	size fractionation	Developing head (H)	durum	Tjilkuri	GSM1698213	Water deficit stress treatment group (WG)
SRX1042021	SRR2043903 SRR2043904	size fractionation	Developing head (H)	durum	Tjilkuri	GSM1698212	Water deficit stress treatment group (WG)
SRX1042020	SRR2043901 SRR2043902	size fractionation	Developing head (H)	durum	Tjilkuri	GSM1698211	Water deficit stress treatment group (WG)
SRX1042019	SRR2043899 SRR2043900	size fractionation	Developing head (H)	durum	Tjilkuri	GSM1698210	Control Group (CG)
SRX1042018	SRR2043897 SRR2043898	size fractionation	Developing head (H)	durum	Tjilkuri	GSM1698209	Control Group (CG)
SRX1042017	SRR2043895 SRR2043896	size fractionation	Developing head (H)	durum	Tjilkuri	GSM1698208	Control Group (CG)
SRX1042016	SRR2043893 SRR2043894	size fractionation	Developing head (H)	durum	Tjilkuri	GSM1698207	Control Group (CG)
SRX1042015	SRR2043892	size fractionation	Developing head (H)	durum	Tjilkuri	GSM1698206	Control Group (CG)
SRX1042014	SRR2043890 SRR2043891	size fractionation	Developing head (H)	durum	Tjilkuri	GSM1698205	Control Group (CG)
SRX1042013	SRR2043888 SRR2043889	size fractionation	Flag leaf (FL)	durum	Tjilkuri	GSM1698204	Water deficit stress treatment group (WG)
SRX1042012	SRR2043887	size fractionation	Flag leaf (FL)	durum	Tjilkuri	GSM1698203	Water deficit stress treatment group (WG)
SRX1042011	SRR2043885 SRR2043886	size fractionation	Flag leaf (FL)	durum	Tjilkuri	GSM1698202	Water deficit stress treatment group (WG)
SRX1042010	SRR2043883 SRR2043884	size fractionation	Flag leaf (FL)	durum	Tjilkuri	GSM1698201	Water deficit stress treatment group (WG)
SRX1042009	SRR2043881 SRR2043882	size fractionation	Flag leaf (FL)	durum	Tjilkuri	GSM1698200	Water deficit stress treatment group (WG)
SRX1042008	SRR2043879 SRR2043880	size fractionation	Flag leaf (FL)	durum	Tjilkuri	GSM1698199	Water deficit stress treatment group (WG)
SRX1042007	SRR2043877 SRR2043878	size fractionation	Flag leaf (FL)	durum	Tjilkuri	GSM1698198	Control Group (CG)
SRX1042006	SRR2043875 SRR2043876	size fractionation	Flag leaf (FL)	durum	Tjilkuri	GSM1698197	Control Group (CG)
SRX1042005	SRR2043873 SRR2043874	size fractionation	Flag leaf (FL)	durum	Tjilkuri	GSM1698196	Control Group (CG)
SRX1042004	SRR2043872	size fractionation	Flag leaf (FL)	durum	Tjilkuri	GSM1698195	Control Group (CG)
SRX1042003	SRR2043871	size fractionation	Flag leaf (FL)	durum	Tjilkuri	GSM1698194	Control Group (CG)
SRX1042002	SRR2043869 SRR2043870	size fractionation	Flag leaf (FL)	durum	Tjilkuri	GSM1698193	Control Group (CG)
SRX1042001	SRR2043867 SRR2043868	size fractionation	Developing head (H)	durum	Yawa	GSM1698192	Water deficit stress treatment group (WG)
SRX1042000	SRR2043865 SRR2043866	size fractionation	Developing head (H)	durum	Yawa	GSM1698191	Water deficit stress treatment group (WG)
SRX1041999	SRR2043863 SRR2043864	size fractionation	Developing head (H)	durum	Yawa	GSM1698190	Water deficit stress treatment group (WG)
SRX1041998	SRR2043862	size fractionation	Developing head (H)	durum	Yawa	GSM1698189	Water deficit stress treatment group (WG)
SRX1041997	SRR2043860 SRR2043861	size fractionation	Developing head (H)	durum	Yawa	GSM1698188	Water deficit stress treatment group (WG)
SRX1041996	SRR2043858 SRR2043859	size fractionation	Developing head (H)	durum	Yawa	GSM1698187	Water deficit stress treatment group (WG)
SRX1041995	SRR2043857	size fractionation	Developing head (H)	durum	Yawa	GSM1698186	Control Group (CG)
SRX1041994	SRR2043855 SRR2043856	size fractionation	Developing head (H)	durum	Yawa	GSM1698185	Control Group (CG)
SRX1041993	SRR2043853 SRR2043854	size fractionation	Developing head (H)	durum	Yawa	GSM1698184	Control Group (CG)
SRX1041992	SRR2043851 SRR2043852	size fractionation	Developing head (H)	durum	Yawa	GSM1698183	Control Group (CG)
SRX1041991	SRR2043849 SRR2043850	size fractionation	Developing head (H)	durum	Yawa	GSM1698182	Control Group (CG)
SRX1041990	SRR2043847 SRR2043848	size fractionation	Developing head (H)	durum	Yawa	GSM1698181	Control Group (CG)
SRX1041989	SRR2043845 SRR2043846	size fractionation	Flag leaf (FL)	durum	Yawa	GSM1698180	Water deficit stress treatment group (WG)
SRX1041988	SRR2043843 SRR2043844	size fractionation	Flag leaf (FL)	durum	Yawa	GSM1698179	Water deficit stress treatment group (WG)
SRX1041987	SRR2043841 SRR2043842	size fractionation	Flag leaf (FL)	durum	Yawa	GSM1698178	Water deficit stress treatment group (WG)
SRX1041986	SRR2043839 SRR2043840	size fractionation	Flag leaf (FL)	durum	Yawa	GSM1698177	Water deficit stress treatment group (WG)
SRX1041985	SRR2043837 SRR2043838	size fractionation	Flag leaf (FL)	durum	Yawa	GSM1698176	Water deficit stress treatment group (WG)
SRX1041984	SRR2043835 SRR2043836	size fractionation	Flag leaf (FL)	durum	Yawa	GSM1698175	Water deficit stress treatment group (WG)
SRX1041983	SRR2043833 SRR2043834	size fractionation	Flag leaf (FL)	durum	Yawa	GSM1698174	Control Group (CG)
SRX1041982	SRR2043831 SRR2043832	size fractionation	Flag leaf (FL)	durum	Yawa	GSM1698173	Control Group (CG)
SRX1041981	SRR2043830	size fractionation	Flag leaf (FL)	durum	Yawa	GSM1698172	Control Group (CG)
SRX1041980	SRR2043828 SRR2043829	size fractionation	Flag leaf (FL)	durum	Yawa	GSM1698171	Control Group (CG)
SRX1041979	SRR2043826 SRR2043827	size fractionation	Flag leaf (FL)	durum	Yawa	GSM1698170	Control Group (CG)
SRX1041978	SRR2043825	size fractionation	Flag leaf (FL)	durum	Yawa	GSM1698169	Control Group (CG)
SRX1041977	SRR2043823 SRR2043824	size fractionation	Developing head (H)	durum	EGA Bellaroi	GSM1698168	Water deficit stress treatment group (WG)
SRX1041976	SRR2043821 SRR2043822	size fractionation	Developing head (H)	durum	EGA Bellaroi	GSM1698167	Water deficit stress treatment group (WG)
SRX1041975	SRR2043819 SRR2043820	size fractionation	Developing head (H)	durum	EGA Bellaroi	GSM1698166	Water deficit stress treatment group (WG)
SRX1041974	SRR2043818	size fractionation	Developing head (H)	durum	EGA Bellaroi	GSM1698165	Water deficit stress treatment group (WG)
SRX1041973	SRR2043816 SRR2043817	size fractionation	Developing head (H)	durum	EGA Bellaroi	GSM1698164	Water deficit stress treatment group (WG)
SRX1041972	SRR2043814 SRR2043815	size fractionation	Developing head (H)	durum	EGA Bellaroi	GSM1698163	Water deficit stress treatment group (WG)
SRX1041971	SRR2043813	size fractionation	Developing head (H)	durum	EGA Bellaroi	GSM1698162	Control Group (CG)
SRX1041970	SRR2043811 SRR2043812	size fractionation	Developing head (H)	durum	EGA Bellaroi	GSM1698161	Control Group (CG)
SRX1041969	SRR2043809 SRR2043810	size fractionation	Developing head (H)	durum	EGA Bellaroi	GSM1698160	Control Group (CG)
SRX1041968	SRR2043807 SRR2043808	size fractionation	Developing head (H)	durum	EGA Bellaroi	GSM1698159	Control Group (CG)
SRX1041967	SRR2043805 SRR2043806	size fractionation	Developing head (H)	durum	EGA Bellaroi	GSM1698158	Control Group (CG)
SRX1041966	SRR2043803 SRR2043804	size fractionation	Developing head (H)	durum	EGA Bellaroi	GSM1698157	Control Group (CG)
SRX1041965	SRR2043801 SRR2043802	size fractionation	Flag leaf (FL)	durum	EGA Bellaroi	GSM1698156	Water deficit stress treatment group (WG)
SRX1041964	SRR2043800	size fractionation	Flag leaf (FL)	durum	EGA Bellaroi	GSM1698155	Water deficit stress treatment group (WG)
SRX1041963	SRR2043799	size fractionation	Flag leaf (FL)	durum	EGA Bellaroi	GSM1698154	Water deficit stress treatment group (WG)
SRX1041962	SRR2043797 SRR2043798	size fractionation	Flag leaf (FL)	durum	EGA Bellaroi	GSM1698153	Water deficit stress treatment group (WG)
SRX1041961	SRR2043796	size fractionation	Flag leaf (FL)	durum	EGA Bellaroi	GSM1698152	Water deficit stress treatment group (WG)
SRX1041960	SRR2043794 SRR2043795	size fractionation	Flag leaf (FL)	durum	EGA Bellaroi	GSM1698151	Water deficit stress treatment group (WG)
SRX1041959	SRR2043793	size fractionation	Flag leaf (FL)	durum	EGA Bellaroi	GSM1698150	Control Group (CG)
SRX1041958	SRR2043791 SRR2043792	size fractionation	Flag leaf (FL)	durum	EGA Bellaroi	GSM1698149	Control Group (CG)
SRX1041957	SRR2043789 SRR2043790	size fractionation	Flag leaf (FL)	durum	EGA Bellaroi	GSM1698148	Control Group (CG)
SRX1041956	SRR2043788	size fractionation	Flag leaf (FL)	durum	EGA Bellaroi	GSM1698147	Control Group (CG)
SRX1041955	SRR2043787	size fractionation	Flag leaf (FL)	durum	EGA Bellaroi	GSM1698146	Control Group (CG)
SRX1041954	SRR2043786	size fractionation	Flag leaf (FL)	durum	EGA Bellaroi	GSM1698145	Control Group (CG)
SRX1041953	SRR2043784 SRR2043785	size fractionation	Developing head (H)	durum	Tamaroi	GSM1698144	Water deficit stress treatment group (WG)
SRX1041952	SRR2043782 SRR2043783	size fractionation	Developing head (H)	durum	Tamaroi	GSM1698143	Water deficit stress treatment group (WG)
SRX1041951	SRR2043780 SRR2043781	size fractionation	Developing head (H)	durum	Tamaroi	GSM1698142	Water deficit stress treatment group (WG)
SRX1041950	SRR2043779	size fractionation	Developing head (H)	durum	Tamaroi	GSM1698141	Water deficit stress treatment group (WG)
SRX1041949	SRR2043778	size fractionation	Developing head (H)	durum	Tamaroi	GSM1698140	Water deficit stress treatment group (WG)
SRX1041948	SRR2043776 SRR2043777	size fractionation	Developing head (H)	durum	Tamaroi	GSM1698139	Water deficit stress treatment group (WG)
SRX1041947	SRR2043775	size fractionation	Developing head (H)	durum	Tamaroi	GSM1698138	Control Group (CG)
SRX1041946	SRR2043773 SRR2043774	size fractionation	Developing head (H)	durum	Tamaroi	GSM1698137	Control Group (CG)
SRX1041945	SRR2043771 SRR2043772	size fractionation	Developing head (H)	durum	Tamaroi	GSM1698136	Control Group (CG)
SRX1041944	SRR2043769 SRR2043770	size fractionation	Developing head (H)	durum	Tamaroi	GSM1698135	Control Group (CG)
SRX1041943	SRR2043767 SRR2043768	size fractionation	Developing head (H)	durum	Tamaroi	GSM1698134	Control Group (CG)
SRX1041942	SRR2043766	size fractionation	Developing head (H)	durum	Tamaroi	GSM1698133	Control Group (CG)
SRX1041941	SRR2043765	size fractionation	Flag leaf (FL)	durum	Tamaroi	GSM1698132	Water deficit stress treatment group (WG)
SRX1041940	SRR2043763 SRR2043764	size fractionation	Flag leaf (FL)	durum	Tamaroi	GSM1698131	Water deficit stress treatment group (WG)
SRX1041939	SRR2043761 SRR2043762	size fractionation	Flag leaf (FL)	durum	Tamaroi	GSM1698130	Water deficit stress treatment group (WG)
SRX1041938	SRR2043759 SRR2043760	size fractionation	Flag leaf (FL)	durum	Tamaroi	GSM1698129	Water deficit stress treatment group (WG)
SRX1041937	SRR2043757 SRR2043758	size fractionation	Flag leaf (FL)	durum	Tamaroi	GSM1698128	Water deficit stress treatment group (WG)
SRX1041936	SRR2043755 SRR2043756	size fractionation	Flag leaf (FL)	durum	Tamaroi	GSM1698127	Water deficit stress treatment group (WG)
SRX1041935	SRR2043754	size fractionation	Flag leaf (FL)	durum	Tamaroi	GSM1698126	Control Group (CG)
SRX1041934	SRR2043752 SRR2043753	size fractionation	Flag leaf (FL)	durum	Tamaroi	GSM1698125	Control Group (CG)
SRX1041933	SRR2043750 SRR2043751	size fractionation	Flag leaf (FL)	durum	Tamaroi	GSM1698124	Control Group (CG)
SRX1041932	SRR2043748 SRR2043749	size fractionation	Flag leaf (FL)	durum	Tamaroi	GSM1698123	Control Group (CG)
SRX1041931	SRR2043746 SRR2043747	size fractionation	Flag leaf (FL)	durum	Tamaroi	GSM1698122	Control Group (CG)
SRX1041930	SRR2043745	size fractionation	Flag leaf (FL)	durum	Tamaroi	GSM1698121	Control Group (CG)

Run	LibrarySelection	Stage	Tissue	Cultivar	Sample Name	geo_loc_name
SRR5460520	RT-PCR	6 days after pollination	endosperm	TMU06	TMU06(AA)_endosperm_sRNA	China:Nanjing
SRR5460519	RT-PCR	6 days after pollination	endosperm	TMU06	TMU06(AA)_endosperm_sRNA	China:Nanjing
SRR5460518	RT-PCR	6 days after pollination	endosperm	TMU06	TMU06(AA)_endosperm_sRNA	China:Nanjing
SRR5460508	RT-PCR	6 days after pollination	endosperm	TMU38	TMU38(AA)_endosperm_sRNA	China:Nanjing
SRR5460507	RT-PCR	6 days after pollination	endosperm	TMU38	TMU38(AA)_endosperm_sRNA	China:Nanjing
SRR5460481	RT-PCR	6 days after pollination	endosperm	TMU38	TMU38(AA)_endosperm_sRNA	China:Nanjing
SRR5460523	RT-PCR	6 days after pollination	endosperm	TL05	TL05(SS)_endosperm_sRNA	China:Nanjing
SRR5460522	RT-PCR	6 days after pollination	endosperm	TL05	TL05(SS)_endosperm_sRNA	China:Nanjing
SRR5460521	RT-PCR	6 days after pollination	endosperm	TL05	TL05(SS)_endosperm_sRNA	China:Nanjing
SRR5460513	RT-PCR	6 days after pollination	endosperm	TQ27	TQ27(DD)_endosperm_sRNA	China:Nanjing
SRR5460512	RT-PCR	6 days after pollination	endosperm	TQ27	TQ27(DD)_endosperm_sRNA	China:Nanjing
SRR5460509	RT-PCR	6 days after pollination	endosperm	TQ27	TQ27(DD)_endosperm_sRNA	China:Nanjing
SRR5460516	RT-PCR	6 days after pollination	endosperm	AT2	AT2(AADD)_endosperm_sRNA	China:Nanjing
SRR5460517	RT-PCR	6 days after pollination	endosperm	AT2	AT2(AADD)_endosperm_sRNA	China:Nanjing
SRR5460524	RT-PCR	6 days after pollination	endosperm	TLTU	TLTU(SSAA)_endosperm_sRNA	China:Nanjing
SRR5460526	RT-PCR	6 days after pollination	endosperm	TLTU	TLTU(SSAA)_endosperm_sRNA	China:Nanjing
SRR5460528	RT-PCR	6 days after pollination	endosperm	TLTU	TLTU(SSAA)_endosperm_sRNA	China:Nanjing
SRR5460515	RT-PCR	6 days after pollination	endosperm	AT2	AT2(AADD)_endosperm_sRNA	China:Nanjing

Run	Library Name	LibrarySelection	Ecotype	Stage	Tissue	Sample Name	geo_loc_name	Treatment
SRR22878362	AGA-sRNA	PCR	GGAAxAA-F1	three-leaf	seedling	Sample 1	China	small RNA
SRR22878361	AGD-sRNA	PCR	GGAAxDD-F1	three-leaf	seedling	Sample 2	China	small RNA

Run	LibrarySource	LibrarySelection	Age	Tissue	Strain	Phenotype	Sample Name	geo_loc_name
DRR057233	TRANSCRIPTOMIC	size fractionation	8-weeks	crown	Ldn/KU-2059	normal	SAMD00048852	Japan:Kobe
DRR057234	TRANSCRIPTOMIC	size fractionation	8 weeks	crown	Ldn/KU-2025	type II necrosis	SAMD00048853	Japan:Kobe
DRR057235	TRANSCRIPTOMIC	size fractionation	8-weeks	crown	Ldn/KU-2059	normal	SAMD00048854	Japan:Kobe
DRR057236	TRANSCRIPTOMIC	size fractionation	8-weeks	crown	Ldn/KU-2025	type II necrosis	SAMD00048855	Japan:Kobe

Run	Library Name	LibrarySelection	Age	Tissue	Sample Name	geo_loc_name
SRR15041375	D_48h1	other	trifoliate stage	leaf	D_48h1	China:Inner Mongolia, Hohhot
SRR15041376	D_24h3	other	trifoliate stage	leaf	D_24h3	China:Inner Mongolia, Hohhot
SRR15041377	D_24h2	other	trifoliate stage	leaf	D_24h2	China:Inner Mongolia, Hohhot
SRR15041378	D_24h1	other	trifoliate stage	leaf	D_24h1	China:Inner Mongolia, Hohhot
SRR15041379	D_12h3	other	trifoliate stage	leaf	D_12h3	China:Inner Mongolia, Hohhot
SRR15041380	D_12h2	other	trifoliate stage	leaf	D_12h2	China:Inner Mongolia, Hohhot
SRR15041381	D_12h1	other	trifoliate stage	leaf	D_12h1	China:Inner Mongolia, Hohhot
SRR15041382	R_24h3	other	trifoliate stage	leaf	R_24h3	China:Inner Mongolia, Hohhot
SRR15041383	R_24h2	other	trifoliate stage	leaf	R_24h2	China:Inner Mongolia, Hohhot
SRR15041384	R_24h1	other	trifoliate stage	leaf	R_24h1	China:Inner Mongolia, Hohhot
SRR15041385	D_7d3	other	trifoliate stage	leaf	D_7d3	China:Inner Mongolia, Hohhot
SRR15041386	CK_3	other	trifoliate stage	leaf	CK_3	China:Inner Mongolia, Hohhot
SRR15041387	D_7d2	other	trifoliate stage	leaf	D_7d2	China:Inner Mongolia, Hohhot
SRR15041388	D_7d1	other	trifoliate stage	leaf	D_7d1	China:Inner Mongolia, Hohhot
SRR15041389	D_5d3	other	trifoliate stage	leaf	D_5d3	China:Inner Mongolia, Hohhot
SRR15041390	D_5d2	other	trifoliate stage	leaf	D_5d2	China:Inner Mongolia, Hohhot
SRR15041391	D_5d1	other	trifoliate stage	leaf	D_5d1	China:Inner Mongolia, Hohhot
SRR15041392	D_3d3	other	trifoliate stage	leaf	D_3d3	China:Inner Mongolia, Hohhot
SRR15041393	D_3d2	other	trifoliate stage	leaf	D_3d2	China:Inner Mongolia, Hohhot
SRR15041394	D_3d1	other	trifoliate stage	leaf	D_3d1	China:Inner Mongolia, Hohhot
SRR15041395	D_48h3	other	trifoliate stage	leaf	D_48h3	China:Inner Mongolia, Hohhot
SRR15041396	D_48h2	other	trifoliate stage	leaf	D_48h2	China:Inner Mongolia, Hohhot
SRR15041397	CK_2	other	trifoliate stage	leaf	CK_2	China:Inner Mongolia, Hohhot
SRR15041398	CK_1	other	trifoliate stage	leaf	CK_1	China:Inner Mongolia, Hohhot

Run	Library Name	LibrarySelection	Tissue	Sample Name	geo_loc_name
SRR6824284	S02	size fractionation	leaves	mirna from Agropyron mongolicum under drought stress	China:InnerMongolia
SRR6516044	S01	-	leaves	Agropyron mongolicum Keng mirna	China:InnerMongolia
SRR6516713	S01	size fractionation	leaves	Agropyron mongolicum Keng mirna	China:InnerMongolia
SRR6516045	S02	size fractionation	leaves	mirna from Agropyron mongolicum under drought stress	China:InnerMongolia

Run	Library Name	LibrarySelection	Stage	Tissue	Sample Name	geo_loc_name
SRR9021153	Psathyrostachys shuashanica-mock-2	size fractionation	seedling stage	leaf	Psathyrostachys huashanica-leaf	China:shaanxi
SRR9021154	Psathyrostachys shuashanica-mock-3	size fractionation	seedling stage	leaf	Psathyrostachys huashanica-leaf	China:shaanxi
SRR9021155	Psathyrostachys shuashanica-14d-3	size fractionation	seedling stage	leaf	Psathyrostachys huashanica-leaf	China:shaanxi
SRR9021156	Psathyrostachys shuashanica-mock-1	size fractionation	seedling stage	leaf	Psathyrostachys huashanica-leaf	China:shaanxi
SRR9021157	Psathyrostachys shuashanica-14d-1	size fractionation	seedling stage	leaf	Psathyrostachys huashanica-leaf	China:shaanxi
SRR9021158	Psathyrostachys shuashanica-14d-2	size fractionation	seedling stage	leaf	Psathyrostachys huashanica-leaf	China:shaanxi
SRR9021159	Psathyrostachys shuashanica-7d-2	size fractionation	seedling stage	leaf	Psathyrostachys huashanica-leaf	China:shaanxi
SRR9021160	Psathyrostachys shuashanica-7d-3	size fractionation	seedling stage	leaf	Psathyrostachys huashanica-leaf	China:shaanxi
SRR9021161	Psathyrostachys shuashanica-3d-3	size fractionation	seedling stage	leaf	Psathyrostachys huashanica-leaf	China:shaanxi
SRR9021162	Psathyrostachys shuashanica-7d-1	size fractionation	seedling stage	leaf	Psathyrostachys huashanica-leaf	China:shaanxi
SRR9021163	Psathyrostachys shuashanica-3d-1	size fractionation	seedling stage	leaf	Psathyrostachys huashanica-leaf	China:shaanxi
SRR9021164	Psathyrostachys shuashanica-3d-2	size fractionation	seedling stage	leaf	Psathyrostachys huashanica-leaf	China:shaanxi

TriticeaeMIRdb:The Triticeae Mirna Database

Introduction

Summary of research on various bioprojects

Detailed information on different bioprojects

TriticeaeMIRdb:The Triticeae Mirna Database

Introduction

Summary of research on various bioprojects

Detailed information on different bioprojects

PRJNA656930: Hordeum vulgare Raw sequence reads.

PRJNA237744: Hordeum vulgare strain Qasr Ibrim strain Targeted Locus (Loci).

PRJNA529516: Hulless Barley SmallRNA Sequencing.

PRJNA507337: Small RNA and degradome sequencing of cultivated barley and Tibetan wild barley.

PRJNA823894: Small RNA sequencing of virus-infected barley plants.

PRJNA823841: Small RNA sequencing of BYDV-infected barley plants.

PRJNA816439: miRNA-barley.

PRJNA809109: Small RNA from barley powdery mildew.

PRJEB40118: Small RNA sequencing of a barley powdery mildew susceptible cultivar (cv) Baudin near-isogenic lines (NILs) introgressed with mlo-11 and mlo-11 (cnv2) mutations.

PRJNA691038: Barley seeds miRNome stability during long-term storage and aging.

PRJNA682179: Identification of microRNAs in response to low potassium stress in the shoots of Tibetan wild barley and cultivated barley [miRNA-seq].

PRJNA636099: sRNA and RNA sequencing profile of barley and wheat anther.

PRJNA634514: Small RNA (sRNA) and parallel analysis of RNA ends (PARE) analysis during the early stage of gametic embryogenesis in barley.

PRJNA608272: NGS analysis of small RNAs under nitrogen excess stress in shoot and root of 2 week old barley plants.

PRJNA607205: Deep-sequencing of small RNAs from barley shoot and root growing in low-Pi and control condition.

PRJNA607200: Deep-sequencing of degraded or cleaved RNAs from barley shoot and root growing in low-Pi condition.

PRJNA476756: Small RNA sequencing of Barley CI 16151 and fast-neutron-derived, immune-compromised mutants infected with the powdery mildew fungus (Blumeria graminis f. sp. hordei (Bgh); isolate 5874).

PRJNA526135: miRNA expression during development and drought stress in barley.

PRJNA485436: A wild barley accession WB-1 and a barley cultivar Golden Promise Raw sequence reads.

PRJNA481620: Hordeum vulgare Genome sequencing.

PRJDB6438: Cloning and Functional Analysis Agronomically Important Genes on Barley.

PRJNA389146: Sequencing of barley embryonic microRNAs.

PRJNA354889: Hordeum vulgare subsp. vulgare Transcriptome or Gene expression.

PRJNA294348: Hordeum vulgare subsp. vulgare Transcriptome or Gene expression.

PRJNA960906: Small RNA sequencing of wheat infected with stem rust.

PRJNA929049: miRNA sequencing of three Turkish wheat species.

PRJNA916207: System analysis of differentially expressed miRNAs in hexaploid wheat display tissue-specific regulatory role during Fe deficiency response.

PRJNA895954: Whole transcriptome resequencing for temperature-mediated seed dormancy regulation in wheat.

PRJNA877088: Wheat spikelet total mRNA sequencing.

PRJNA867659: Analysis of small RNA in wheat ovary stages infected by Tilletia laevis Kuhn.

PRJDB11752: sRNA transcriptome of wheat in response to stem rust and leaf rust interaction.

PRJNA289147: Triticum aestivum infected with Puccinia striiformis : small RNA and PARE (degradome) sequencing.

PRJNA837867: Triticum aestivum Raw sequence reads.

PRJNA799639: Object to identify drought memory-related miRNA in wheat.

PRJNA791687: Transcriptome of Triticum aestivum genotypes associated with resistance against the Wheat dwarf virus.

PRJNA698286: Triticum aestivum Raw sequence reads.

PRJNA683746: sRNA-seq and RNA-seq of wheat inoculating Fusarium graminearum.

PRJNA656372: Temporal expression study of microRNAs in crown tissues of winter wheat grown under natural growth condition.

PRJNA642367: The impacts of m6A methylation on mRNA translation of wheat.

PRJNA578261: Wheat anther miRNA sequencing.

PRJNA563099: miRNA in wheat response to different N level.

PRJNA553193: Small RNA-seq from hexaploid bread wheat (Triticum aestivum) infected with wheat powdery mildew.

PRJNA554945: Triticum aestivum Raw sequence reads.

PRJNA551738: The miRNA-seq of three tissues for Guomai 301 (Triticum aestivum).

PRJNA516200: Identification and Temporal Expression Analysis of Conserved and Novel MicroRNAs in the Leaves of Winter Wheat Grown in the Field.

PRJEB28454: Analysis of small RNA silencing in Zymoseptoria tritici - wheat interactions.

PRJNA523507: microRNA to patassium deprivation of wheat.

PRJNA514418: Mutation of a histidine-rich calcium-binding protein gene in wheat confers resistance to Fusarium head blight.

PRJNA511811: sRNA sequencing of wheat infected with BYDV-GAV.

PRJNA480952: Small RNA sequncing of Wheat infected by Zymoseptoria tritici during the infection cycle.

PRJEB24307: Transcriptomic analysis of Fusarium graminearum disease response in near-isogenic hexaploid wheat lines differeing for the presence of a resistance QTL on chromosome 2DL.

PRJNA420197: sRNA sequencing of wheat introgression lines treated by saline or alkaline stress.

PRJNA353130: Global studies of miR021b function in wheat.

PRJNA392981: Triticum aestivum Raw sequence reads.

PRJNA383333: Micro-RNA sequencing of four different stages of spike in wheat.

PRJNA380529: Triticum aestivum Transcriptome or Gene expression.

PRJNA374855: sRNAs from Triticum aestivum and Delphacodes kuscheli Raw sequence reads.

PRJNA353049: Transcriptome and Epigenome analysis in Polyploidy Wheat and its progenitors.

PRJNA347868: Triticum aestivum Raw sequence reads.

PRJNA341486: small RNA and RNA profiling in Triticum turgidum and Triticum aestivum.

PRJNA326902: Deep sequencing of wheat sRNA transcriptome reveals distinct temporal expression pattern of miRNAs in response to heat, light and UV.

PRJNA309881: Triticum aestivum Transcriptome or Gene expression.

PRJNA309061: Triticum aestivum Raw sequence reads.

PRJNA284172: Triticum aestivum cultivar:HD-2967 Transcriptome or Gene expression.

PRJNA275100: Expression profiling of small RNAs in developing wheat grains.

PRJNA270216: Triticum aestivum Transcriptome or Gene expression.

PRJNA266709: Triticum aestivum cultivar:HD2329.

PRJNA242577: Triticum aestivum.

PRJNA241290: Triticum aestivum strain:Chinese spring Transcriptome or Gene expression.

PRJNA171754: Triticum aestivum strain:HD2985, HD2329 Transcriptome or Gene expression.

PRJNA719092: Small RNA, transcriptome and degradome analysis of the transgenerational heat stress response network in durum wheat (durum wheat).

PRJNA706013: Nitrogen starvation-responsive microRNAs are affected by transgenerational stress in durum wheat seedlings (durum wheat).

PRJNA680308: Small RNAs and their targets are associated with the transgenerational effects of water-deficit stress in durum wheat.

PRJNA644573: Multi-omics analysis of small RNA, transcriptome and degradome in T. turgidum - regulatory networks of grain development and abiotic stress response (durum wheat).

PRJNA641098: ntegrated Analysis of Small RNA, Transcriptome, and Degradome Sequencing Reveals the Water-Deficit and Heat Stress Response Network in Durum Wheat (durum wheat).

PRJNA600522: Transgenerational effects of water-deficit and heat stress on germination and seedling vigour - new insights from durum wheat microRNAs (durum wheat).