| Project ID | Title | Publication | Instrument | Description | Notes |
|---|---|---|---|---|---|
| PRJNA341486 | small RNA and RNA profiling in Triticum turgidum and Triticum aestivum | - | Illumina HiSeq 2500 | Identification of key genes for wax production. | Key gene |
| PRJNA551738 | The miRNA-seq of three tissues for Guomai 301 (Triticum aestivum) | Gene Expression Profiles and microRNA Regulation Networks in Tiller Primordia, Stem Tips, and Young Spikes of Wheat Guomai 301 | Illumina HiSeq X Ten | To find gene expression profiles of tiller primordia, stem tips and young spikes for Guomai 301 (Triticum aestivum), we carried out the miRNA-seq. | Gene expression |
| PRJNA642367 | The impacts of m6A methylation on mRNA translation of wheat | Transcriptome-wide analyses of RNA m6A methylation in hexaploid wheat reveal its roles in mRNA translation regulation | Illumina HiSeq 2500 | To investigate the roles of m6A methylation in the regulation of mRNA translation of wheat genes. We conducted transcriptome profiling of m6A and small RNA, and measured the translation levels of mRNAs in wheat spikes. The translation efficienies were compared between mRNAs with or wihtout m6A. | RNA m6A methylation |
| PRJNA241290 | Triticum aestivum strain:Chinese spring Transcriptome or Gene expression | Whole-genome discovery of miRNAs and their targets in wheat (Triticum aestivum L.) | Illumina Genome Analyzer IIx | To identify as much wheat miRNAs and their targets. | Wheat miRNAs and their targets |
| PRJNA275100 | Expression profiling of small RNAs in developing wheat grains | Small RNA and Degradome Sequencing Reveal Complex Roles of miRNAs and Their Targets in Developing Wheat Grains | Illumina HiSeq 2000 | We aimed to identify differentially expressed miRNAs during wheat grain development by using high-throughput sequencing approach. Four small RNA libraries were constructed from wheat grains collected at 7, 14, 21 and 28 days post anthesis (DPA). A total of 165 known miRNAs and 37 novel miRNAs were identified in four small RNA libraries. Moreover, a miRNA-like long hairpin locus was first identified to produce 21~22-nt phased siRNAs. A comparison of the miRNAomes revealed that 55 miRNA families were differentially expressed during the grain development. Overall design: Examination of 4 different small RNA expression profilings in the 4 developmental stages of wheat grains. | 7, 14, 21 and 28 days post anthesis (DPA) |
| PRJNA309061 | Triticum aestivum Raw sequence reads | Comparison of small RNA next-generation sequencing with and without isolation of small RNA fraction | Illumina HiScanSQ | The aim of the present study was to compare data obtained by sequencing small libraries prepared from isolated small RNA fraction and from total RNA. | Isolated small RNA fraction and total RNA |
| PRJNA309881 | Triticum aestivum Transcriptome or Gene expression | Identification and Comparative Analysis of microRNA in Wheat (Triticum aestivum L.) Callus Derived from Mature and Immature Embryos during In vitro Culture | Illumina HiSeq 2000 | wheat callus miRNA. | Mature and Immature Embryos |
| PRJNA383333 | Micro-RNA sequencing of four different stages of spike in wheat | Transcriptome Profiling of Wheat Inflorescence Development from Spikelet Initiation to Floral Patterning Identified Stage-Specific Regulatory Genes | Illumina HiSeq 2000 | Micro-RNA sequencing of four different stages (DR,FM,AM,TS) of spike in wheat. | Four different stages (DR,FM,AM,TS) |
| PRJNA516200 | Identification and Temporal Expression Analysis of Conserved and Novel MicroRNAs in the Leaves of Winter Wheat Grown in the Field | Identification and Temporal Expression Analysis of Conserved and Novel MicroRNAs in the Leaves of Winter Wheat Grown in the Field | BGISEQ-500 | MicroRNAs (miRNAs) are small non-coding RNAs that regulate target mRNAs by inducing degradation or preventing translation of their target mRNAs. Winter wheat, Triticum aestivum., is an important crop plant, yet there are only a few studies on the association of miRNAs and growth and development of winter wheat grown in the field. Here we carried out experimental analysis of miRNAs in wheat leaves by analyzing small RNA profiles at different growth stages. Overall design: To identify miRNAs involved in winter wheat growth and development, we performed high-throughput sequencing of sRNA libraries from leaves at 4 different growth and development stages: three leaf stage, winter dormancy stage, spring greenup stage and jointing stage.Winter wheat cultivar Shimai 22 was grown in the field under natural weather condition;BGISEQ500 RS (BGI, China)platform was used. | Three leaf stage, winter dormancy stage, spring greenup stage and jointing stage |
| PRJNA636099 | sRNA and RNA sequencing profile of barley and wheat anther | Premeiotic, 24-Nucleotide Reproductive PhasiRNAs Are Abundant in Anthers of Wheat and Barley But Not Rice and Maize | NextSeq 550 | Two classes of pre-meiotic (21-nt) and meiotic (24-nt) phasiRNAs and their patterns of accumulation, have been described in maize and rice anthers. Their precise function remains unclear but some studies have shown that they support male fertility. Their important role in anthers underpins our current study to characterize phasiRNAs in wheat and barley anthers. We staged anthers at every 0.2 mm of development for one wheat and two barley varieties. We identified pre-meiotic (0.2 mm, 0.4 mm and 0.6 mm), meiotic (0.8 mm, 1.0 mm and 1.4 mm) and post-meiotic (1.8 mm) anthers for which we then investigated accumulation patterns of RNAs, including reproductive phasiRNAs. | Pre-meiotic、post-meiotic and reproductive |
| PRJNA656372 | Temporal expression study of microRNAs in crown tissues of winter wheat grown under natural growth condition | Temporal expression study of miRNAs in the crown tissues of winter wheat grown under natural growth conditions | BGISEQ-500 | MicroRNAs (miRNAs) are single strand small non-coding RNAs that regulate target mRNAs at post-transcription level. Winter wheat (Triticum aestivum L.), is an important crop plant all over the world. Long term cold exposure (vernalization) is necessary for winter wheat transition from vegetative growth to reproductive growth, yet the involvement of miRNAs in these stages remains unknown. Therefore, we performed next generation sequencing of small RNAs profiles in crown tissues at three-leaf stage, winter dormancy stage, spring greenup stage and jointing stage. Overall design: To identify miRNAs involved in winter wheat growth and development in te field, winter wheat cultivar Shimai 22 was grown in the field under natural weather condition. Crown tissues were collected at 4 different growth and development stages: three leaf stage, winter dormancy stage, spring greenup stage and jointing stage, small RNA libraries were constructed, and BGISEQ500 RS (BGI, China) sequencing platform was used for small RNA libraries sequencing. | Three leaf stage, winter dormancy stage, spring greenup stage and jointing stage |
| Project ID | Title | Publication | Instrument | Description | Notes |
|---|---|---|---|---|---|
| PRJNA171754 | Triticum aestivum strain:HD2985, HD2329 Transcriptome or Gene expression | Identification of Putative RuBisCo Activase (TaRca1)—The Catalytic Chaperone Regulating Carbon Assimilatory Pathway in Wheat (Triticum aestivum) under the Heat Stress | Illumina HiSeq 2000 | The study was conducted in order to find out the differential change in the transcript of tolerant and susceptible wheat cultivar under heat stress and to decipher the mechanism of thermotolerance in wheat by identifying novel genes and transcription factors involved in the pathways. Wheat cultivar HD2985 (thermotolerant) and HD2329 (thermosusceptible) were exposed to heat stress of 42 degree for 4h at pollination stage and samples were collected from both control and heat shock treated plants for further characterization. | Heat stress |
| PRJNA284172 | Triticum aestivum cultivar:HD-2967 Transcriptome or Gene expression | Molecular Characterization of GS2 and Fd-GOGAT Homeologues and Their Biased Response to Nitrogen Stress in Bread Wheat (Triticum aestivum L.) | Illumina HiSeq 2500 | microRNAs from root and shoot tissues of wheat. Submitted by: Subodh K. Sinha and P. K. Mandal. | Root and shoot tissues of wheat |
| PRJNA867659 | Analysis of small RNA in wheat ovary stages infected by Tilletia laevis Kuhn | Characteristics of the Infection of Tilletia laevis Kühn (syn. Tilletia foetida (Wallr.) Liro.) in Compatible Wheat | Illumina HiSeq 2500 | We used a high-throughput sequencing approach to determine miRNAs in three different developmental stages of T. laevis-infected wheat ovaries. | Wheat ovary stage |
| PRJNA480952 | Small RNA sequncing of Wheat infected by Zymoseptoria tritici during the infection cycle | Small RNA Bidirectional Crosstalk During the Interaction Between Wheat and Zymoseptoria tritici | NextSeq 500 | We studied the bidirectional cross-kingdom RNAi in wheat-Z. tritici pathosystem. The whole dataset contains sRNA-seq, degradome sequencing and mRNA-seq. The sRNA-seq samples include wheat infected by Z. tritici at 7dpi, 12dpi and 14dpi, wheat without infections (Mocks) at 7dpi, 12dpi and 14dpi, and Z. tritici grow in vitro. All of the sRNA-seq samples have three replicates. The degradome sequencing data include mocks (7dpi and 12dpi), wheat infected by Z. tritici (7dpi and 12dpi) and Z. tritici grow in vitro. Additionally, there are as well mRNA-seq of mocks at 7dpi and 12dpi, which have three replicates. | 7dpi, 12dpi and 14dpi |
| PRJNA266709 | Triticum aestivum cultivar:HD2329 | Uncovering leaf rust responsive miRNAs in wheat (Triticum aestivum L.) using high-throughput sequencing and prediction of their targets through degradome analysis | Illumina MiSeq | The major threat to wheat production in past decades has been the rust epidemics. The present study was targeted towards understanding of the mechanism and functional characterization of miRNAs of wheat in response to leaf rust ingression. With the improvement in methods to explore the transcriptome, in recent years there have been great advances in identifying and understanding non-coding RNAs. Recent studies indicate involvements of miRNAs in plant development, growth and responses to biotic and abiotic stresses, adaptive responses, metabolism, and signal transduction. Therefore, Illumina’s deep sequencing technology was used for transcriptome-wide identification of miRNAs and their expression profiling in response to leaf rust infection using mock and pathogen inoculated resistant (HD2329+Lr24) and susceptible (HD2329) near-isogenic wheat plants. | Leaf rust ingression |
| PRJNA270216 | Triticum aestivum Transcriptome or Gene expression | Identification and comparative analysis of differentially expressed miRNAs in leaves of two wheat (Triticum aestivum L.) genotypes during dehydration stress | Illumina HiSeq 2000 | To identify those miRNAs involved in dehydration stress tolerance. | Dehydration stress |
| PRJNA289147 | Triticum aestivum infected with Puccinia striiformis: small RNA and PARE (degradome) sequencing | Analysis of miRNAs in Two Wheat Cultivars Infected With Puccinia striiformis f. sp. tritici | Ion Torrent Proton,Illumina HiSeq 2500 | The fungus Puccinia striiformis causes stripe rust disease in cereal crops. This project contains raw sequence reads from small RNA sequencing and Parallel Analysis of RNA Ends (PARE, i.e. degradome-seq). Both infected and uninfected wheat are featured. | Infected with Puccinia striiformis |
| PRJNA326902 | Deep sequencing of wheat sRNA transcriptome reveals distinct temporal expression pattern of miRNAs in response to heat, light and UV | Deep sequencing of wheat sRNA transcriptome reveals distinct temporal expression pattern of miRNAs in response to heat, light and UV | Illumina HiSeq 2000 | Understanding of plant adaptation to abiotic stresses has implications in plant breeding, especially in the context of climate change. MicroRNAs (miRNAs) and short interfering RNAs play a crucial role in gene regulation. Here, wheat plants were exposed to one of the following stresses: continuous light, heat or ultraviolet radiations over five consecutive days and, leaf tissues from three biological replicates were harvested at 0, 1, 2, 3, 7 and 10 days after treatment (DAT). A total of 72 small RNA libraries were sequenced on the Illumina platform generating ~524 million reads corresponding to ~129 million distinct tags from which 232 conserved miRNAs were identified. The expression levels of 1, 2 and 79 miRNAs were affected by ultraviolet radiations, continuous light and heat, respectively. Approximately 55% of the differentially expressed miRNAs were downregulated at 0 and 1 DAT including miR398, miR528 and miR156 that control mRNAs involved in activation of signal transduction pathways and flowering. Other putative targets included histone variants and methyltransferases. These results suggest a temporal miRNA-guided post-transcriptional regulation that enables wheat to respond to abiotic stresses, particularly heat. Designing novel wheat breeding strategies such as regulatory gene-based marker assisted selection depends on accurate identification of stress induced miRNAs. Overall design: Wheat plants were exposed to one of the following stresses: continuous light, heat or ultraviolet radiations over five consecutive days and, leaf tissues from three biological replicates were harvested at 0, 1, 2, 3, 7 and 10 days after treatment (DAT). A total of 72 small RNA libraries were sequenced on the Illumina platform. | Response to heat, light and UV |
| PRJNA374855 | sRNAs from Triticum aestivum and Delphacodes kuscheli Raw sequence reads | Mal de Río Cuarto Virus Infection Triggers the Production of Distinctive Viral-Derived siRNA Profiles in Wheat and Its Planthopper Vector | Illumina HiSeq 1500 | Comparative analysis of sRNAs in MRCV (Mal de Río Cuarto virus) infected plants (wheat) and insects (D. kuscheli). | Mal de Río Cuarto virus Infection |
| PRJNA392981 | Triticum aestivum Raw sequence reads | Genome-Wide Identification and Characterization of Long Non-Coding RNA in Wheat Roots in Response to Ca2+ Channel Blocker | Illumina HiSeq 2500 | Search different expression mRNA in wheat root induced by Ca2+-channel blocking. | Ca2+-channel blocking |
| PRJNA420197 | sRNA sequencing of wheat introgression lines treated by saline or alkaline stress | Small RNA and degradome sequencing used to elucidate the basis of tolerance to salinity and alkalinity in wheat | Illumina HiSeq 2000 | To identify sRNA relative to saline/alkaline stress in wheat. | Saline/Alkaline stress |
| PRJNA511811 | sRNA sequencing of wheat infected with BYDV-GAV | Barley yellow dwarf virus-GAV-derived vsiRNAs are involved in the production of wheat leaf yellowing symptoms by targeting chlorophyll synthase | BGISEQ-500 | Obtaining total sRNA data from wheat leaves infected with BYDV-GAV. | Infected with BYDV-GAV |
| PRJNA523507 | microRNA to patassium deprivation of wheat | Global identification and characterization of miRNA family members responsive to potassium deprivation in wheat (Triticum aestivum L.) | Illumina HiSeq 2500 | To provide insights into micorRNA to patassium deprivation in the seeding stage of wheat. | Patassium deprivation |
| PRJNA553193 | Small RNA-seq from hexaploid bread wheat (Triticum aestivum) infected with wheat powdery mildew | Domestication of High-Copy Transposons Underlays the Wheat Small RNA Response to an Obligate Pathogen | Illumina HiSeq 2500 | Sequencing data from wheat leaf material infected with three different powdery mildew (B.g. tritici ) isolates and from uninfected leaves. The goal of the project is to investigate the wheat small RNA response to wheat powdery mildew infection. | Powdery mildew |
| PRJNA563099 | miRNA in wheat response to different N level | Identification of microRNAs in developing wheat grain that are potentially involved in regulating grain characteristics and the response to nitrogen levels | Illumina HiSeq 2000 | Study the key miRNA related to nitrogen stress during wheat develoment. | Nitrogen stress |
| PRJNA698286 | Triticum aestivum Raw sequence reads | Comparative Small RNA Profiling and Functional Exploration on Wheat With High- and Low-Cadmium Accumulation | HiSeq X Ten | To find out the miRNAs related to the absorption of heavy metal cadmium in wheat. | Heavy metal cadmium |
| PRJNA799639 | Object to identify drought memory-related miRNA in wheat | Integrate Small RNA and Degradome Sequencing to Reveal Drought Memory Response in Wheat (Triticum aestivum L.) | Illumina HiSeq 2500 | This study identified drought memory response miRNAs and their target genes in wheat by small RNA.Trileaf stage wheat seedlings were divided into three groups: control group (CG), direct drought (DD) and drought memory (DM) groups. | Drought memory |
| PRJNA837867 | Triticum aestivum Raw sequence reads | Identification of long non-coding RNA-microRNA-mRNA regulatory modules and their potential roles in drought stress response in wheat (Triticum aestivum L.) | Illumina NovaSeq 6000 | Drought induced miRNAome of two wheat (Triticum aestivum L.) varieties. | Drought |
| PRJNA877088 | Wheat spikelet total mRNA sequencing | Heat-induced RING/U-BOX E3 ligase, TaUHS, is a negative regulator by facilitating TaLSD degradation during the grain filling period in wheat | HiSeq X Ten | Analysis total RNA expression under heat stress during grain-filling stage. | Heat stress |
| PRJNA895954 | Whole transcriptome resequencing for temperature-mediated seed dormancy regulation in wheat | Identification and validation of coding and non-coding RNAs involved in high-temperature-mediated seed dormancy in common wheat | Illumina HiSeq 4000 | Identification of mRNAs lncRNAs and miRNAs involved in temperature-mediated seed dormancy regulation in wheat. | Temperature-mediated seed dormancy regulation |
| PRJNA916207 | System analysis of differentially expressed miRNAs in hexaploid wheat display tissue-specific regulatory role during Fe deficiency response | System analysis of differentially expressed miRNAs in hexaploid wheat display tissue-specific regulatory role during Fe deficiency response | Illumina NovaSeq 6000 | Iron (Fe) deficiency in soil could largely affect crop productivity but the molecular mechanisms underlying the regulation of Fe deficiency response are still limited. Specifically, microRNA (miRNA) mediated regulation of Fe deficiency genes and the network is poorly understood. In the current work, we aim to understand the molecular mechanisms of Fe deficiency response in wheat seedlings by generating an inventory of differentially expressed miRNAs. Stem loop quantitative RT PCR analysis suggested the expression of these miRNAs in a spatio-temporal fashion, with few showing time-specific expression responses. Furthermore, miRNA target prediction analysis suggested that few of these miRNA could specifically target genes such as multicopper oxidases, E3 ubiquitin ligases, GRAS family and WRKY transcription factors known to be involved in Fe homeostasis. Our work provides insights into miRNA-mediated regulatory pathways during Fe deficiency response. The first information generated here will help to identify the candidate genes for genetic improvement of Fe deficiency tolerance in hexaploid wheat. | Iron (Fe) deficiency |
| PRJNA929049 | miRNA sequencing of three Turkish wheat species | Diverse expression pattern of wheat transcription factors against abiotic stresses in wheat species | Illumina HiSeq 2000 | This is a comparison study about miRNA libraries of three Turkish wheat cultivars in different ploidy levels (Triticum aestivum cv. Yuregir-89, Triticum turgidum cv. Kiziltan-91 and Triticum monococcum). In this project, it was aimed to reveal the miRNAs that play a role in drought stress tolerance by investigating the differences in miRNA expression profiles under drought stress among one drought tolerant (Kiziltan-91), another moderately drought tolerant (Yuregir-89) and ancestral wheat species. For this purpose, total RNA isolation was performed by collecting root and leaf samples from control and stressed plants and sRNA-Seq was performed using next generation sequencing (NGS) technology. | Drought stress tolerance |
| PRJNA683746 | sRNA-seq and RNA-seq of wheat inoculating Fusarium graminearum | Identification of Wheat LACCASEs in Response to Fusarium graminearum as Potential Deoxynivalenol Trappers | BGISEQ-500 | Elucidate the mechanism of wheat-Fusarium graminearum interaction. | Fusarium graminearum |
| PRJNA791687 | Transcriptome of Triticum aestivum genotypes associated with resistance against the Wheat dwarf virus | Transcriptome Dynamics in Triticum aestivum Genotypes Associated with Resistance against the Wheat Dwarf Virus | NextSeq 500 | Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goals of this study are to compare NGS-derived Triticum aestivum transcriptome (RNA-seq) profiling methods and to evaluate genotypes associated with resistance against the Wheat dwarf virus. Methods: Triticum aestivum mRNA profiles of genotypes associated with resistance against the Wheat dwarf virus were generated by deep sequencing, in four replicates, using Illumina. The sequence reads that passed quality filters were analyzed at the transcript isoform level with two methods: Burrows–Wheeler Aligner (BWA) followed by ANOVA (ANOVA) and TopHat followed by Cufflinks. qRT–PCR validation was performed using TaqMan and SYBR Green assays. Conclusions: Our study represents the first detailed analysis of Triticum aestivum transcriptomes, with biologic replicates, generated by RNA-seq technology. The optimized data analysis workflows reported here should provide a framework for comparative investigations of expression profiles. Our results show that NGS offers a comprehensive and more accurate quantitative and qualitative evaluation of mRNA and miRNA content within a cell or tissue. We conclude that RNA-seq based transcriptome characterization would expedite genetic network analyses and permit the dissection of complex biologic functions. Overall design: Triticum aestivum mRNA profiles of genotypes associated with resistance against the Wheat dwarf virus were generated. | Wheat dwarf virus |
| PRJNA960906 | Small RNA sequencing of wheat infected with stem rust | Dual host-pathogen small RNA sequencing during wheat stem rust infection | Ion Torrent Proton | This experiment isolated small RNA from Triticum aestivum seedlings infected with Puccinia graminis f.sp. tritici, in order to study gene regulation during a biotrophic interaction. Three infected replicates and three mock-inoculated replicates. Libraries were sequenced on the Ion Torrent platform. | Wheat stem rust infection |
| Project ID | Title | Publication | Instrument | Description | Notes |
|---|---|---|---|---|---|
| PRJDB11752 | sRNA transcriptome of wheat in response to stem rust and leaf rust interaction | Stem and leaf rust–induced miRNAome in bread wheat near-isogenic lines and their comparative analysis | Illumina HiSeq 2500 | The R-gene mediated resistance has been employed as an efficient approach to control the rust diseases in wheat, one of the dreadful biotrophic fungal diseases affecting crop yield. The R-genes Sr36 and Lr45 have proven their ability in controlling highly virulent strains of stem rust and leaf rust diseases respectively. However, these R-gene mediated modulation over the regulatory non-coding RNAs was unclear. We demonstrated the alteration in non-coding RNA profiles during the resistant and susceptible interaction of wheat with stem rust and leaf rust using Sr36 and Lr45 carrying lines as resistant lines. Puccinia graminis pathotype 40A and Puccinia triticina pathotype 77-5 were used for the infection treatment whereas, water was used for the mock treatment. The non-coding RNA profiles obtained in this study will be a resource to the expanding rust disease management program. | R-gene |
| PRJNA383463 | Asymmetrical changes in chromatin and small RNAs contribute to altered gene expression and endosperm development in resynthesized wheat allotetraploids | Asymmetrical changes of gene expression, small RNAs and chromatin in two resynthesized wheat allotetraploids | Illumina HiSeq 2000 | We performed genome-wide analyses of mRNA and small RNA transcriptomes in the endosperm of two synthetic wheats SSAA and AADD that differ in seed fertility and size. Transcriptomes between the endosperm and root of AADD were also analyzed to test a developmental role. Immunostaining experiments were performed to analyze the changes of histone H3K9me2 modifications in the chromosomes of two wheat allotetraploids and their progenitors. | Intergenic spacer (IGS) |
| PRJEB24307 | Transcriptomic analysis of Fusarium graminearum disease response in near-isogenic hexaploid wheat lines differeing for the presence of a resistance QTL on chromosome 2DL | Comparative Transcriptome Profiles of Near-Isogenic Hexaploid Wheat Lines Differing for Effective Alleles at the 2DL FHB Resistance QTL | Illumina Genome Analyzer IIx | To mine the molecular response associated with the wheat 2DL FHB resistance QTL and to identify candidate genes implicated in such esistance, a comprehensive transcriptomic analysis of the early response to F. graminearum infection in spikelet and rachis was performermed with the RNA-Seq and miRNA-Seq techniques. The analyses were conducted on two near isogenic lines differing for the presence of the 2DL QTL. The response to fungal infection in terms of mRNAs accumulation trend was similar in both NILs, even if at higher intensity in the susceptible NIL, and involved inhibition of primary metabolism and activation of secondary metabolism, amino acid metabolism, cell all reinforcement and remodelling, scavenging of ROS, hormone metabolism and signalling, detoxification and induction of several genes encoding transcription factors and proteins implicated in pathogens resistance response. To search for candidate genes with expression profiles associated with the 2DL QTL resistance led to the discovery of two different strategies associated with sugar signalling in the two NILs. Two genes associated with FHB suscaptibility were discovered. Altered expression was also observed for fungal non-coding RNAs which putative targets were represented by the WIR1A gene, involved in resistance response, and a gene encoding for a jacalin-related lectin protein, which partecipate in biotic and abiotic stress response. The data support the presence of a cross-talk between the plant and the fungus. | F. graminearum infection |
| PRJEB28454 | Analysis of small RNA silencing in Zymoseptoria tritici – wheat interactions | Analysis of small RNA silencing in Zymoseptoria tritici – wheat interactions | Illumina HiSeq 2000 | Deep sequencing of small RNA preparations from Zymoseptoria tritici isolate IPO323 cultured in vitro (in Czapek-Dox Broth, CDB) and those from the infected wheat cv. Bobwhite leaf tissues sampled at the four different time points corresponding to the four critical phases of Septoria tritici blotch disease development, namely 4 dpi (asymptomatic phase), 9 dpi (transition to necrotrophic stage), 13 dpi (necrotrophic phase), and 21 dpi (profuse asexual sporulation) was carried out on an Illumina HiSeq 2000 using 50 cycle single end reads. Deep sequencing of small RNA preparations from mock-inoculated wheat cv. Bobwhite leaves sampled at 4 dpi, 9 dpi, 13 dpi, and 21 dpi and from healthy, untreated 17 days old wheat cv. Bobwhite leaves was also carried out using the same sequencing technology. | 4 dpi, 9 dpi, 13 dpi, and 21 dpi |
| PRJNA242577 | Triticum aestivum | Identification of Novel miRNAs and miRNA Expression Profiling in Wheat Hybrid Necrosis | Illumina HiSeq 2000 | Identification of Novel miRNAs and miRNA Expression Profiling in Wheat Hybrid Necrosis. | Wheat hybrid necrosis |
| PRJNA347868 | Triticum aestivum Raw sequence reads | GmDREB1 overexpression affects the expression of microRNAs in GM wheat seeds | Illumina HiSeq 2500 | In this study, we performed deep sequencing of sRNAs from a transgenic wheat line overexpressing GmDREB1 and non-transgenic wheat varieties. | GmDREB1 overexpression |
| PRJNA353049 | Transcriptome and Epigenome analysis in Polyploidy Wheat and its progenitors | New insights on the evolution of nucleolar dominance in newly resynthesized hexaploid wheat Triticum zhukovskyi | Illumina HiSeq 2000 | We analyzed sequence features of intergenic spacer (IGS) in the progenitors of common wheat Triticum aestivum (AABBDD), which revealed nucleolar organizing region (NOR) dominance hierarchy (BB > DD > AA). The hierarchy is based on the length, transcript start site, number and sequence variation of Rep1 (promoter-like repeat) unit. Transcriptome and epigenome in the synthetic tetraploid wheat (AADD / DDAA) and their progenitors T. urartu (AA) and Ae. tauschii (DD) were further investigated to explore the mechanism for NOR silencing. We found that long non-coding RNAs and 24-nt small interfering RNAs were highly abundant in the IGS regions of the DD, and scarcity in AA. After polyploidy formation, NORs of AA subgenome were silenced and associated with increased levels of 24-nt siRNAs derived from active NOR of the DD subgenome. These DD-subgenome 24-nt siRNAs may trans-act on AA-genome IGS to induce DNA methylation via RNA directed DNA methylation (RdDM). Furthermore, BS-Seq and MeDIP-Seq assay show siRNA-targeted regions in AA-subgenome IGS were hypermethylated. Additionally, the increased H3K27me3 and decreased H4K12ac were found in AA-subgenome IGS after polyploidization. This similar phenomenon of BB 24-nt siRNAs trans-act on DD was detected in hexaploid wheat. | Histone H3K9me2 |
| PRJNA353130 | Global studies of miR021b function in wheat | Wheat miR9678 Affects Seed Germination by Generating Phased siRNAs and Modulating Abscisic Acid/Gibberellin Signaling | Illumina HiSeq 2500 | Seed germination is not only a critical developmental step in the wheat life cycle, but is also important for agricultural production including yield and quality. However, in wheat, the knowledge of the mechanism of regulating seed germination is still limited. In this study, we found 22nt microRNA (miR) miR021b, specifically expressed in scutellum of developing and germinating wheat seed, generated phased ta-siRNAs by cleaving a long non coding RNA LNCR. Overexpression of miR021b in wheat showed a retarded germination and improved resistance to pre-harvest sprouting (PHS), while its silencing enhanced germination rate through transiently expressing in immature embryos. To figure out the mechanism of miR021b regulating seed germination, we found miR021b affected the expression of genes involved in bioactive gibberellin (GA) synthesis and its overexpression reduced the bioactive GA content and inhibited amylase genes expression. In addition, it was observed that TaVp1, TaABF and TaABI3, responded the abscisic acid (ABA) signaling, can bind the promoter of miR021b precursor and regulated its expression, suggesting that miR021b might function in GA-ABA balance during germination. This study identified a signaling pathway that miR021b controlled GA-dependent seed germination in wheat through generating phased ta-siRNAs by cleaved a long non coding RNA LNCR. | miR021b function |
| PRJNA380529 | Triticum aestivum Transcriptome or Gene expression | Uncovering key small RNAs associated with gametocidal action in wheat | Illumina Genome Analyzer | Two small RNA libraries were constructed from T. Aestivum cv. Chinese Spring (CS) and Chinese Spring-gametocidal 3C chromosome monosomic addition line (CS-3C) and sequenced using Illumina high throughput sequencing technology to investigate whether small RNAs play a role in the gametocidal phenomenon. | Gametocidal action |
| PRJNA514418 | Mutation of a histidine-rich calcium-binding protein gene in wheat confers resistance to Fusarium head blight | Mutation of a histidine-rich calcium-binding-protein gene in wheat confers resistance to Fusarium head blight | Illumina HiSeq 2500 | We isolated the major-effect wheat QTL, Qfhs.njau-3B, that confers head blight resistance and showed that it is the same as the previously designated Fhb1. Fhb1 results from a rare deletion involving the 3’ exon of the histidine-rich calcium-binding protein gene on chromosome 3BS. Both wheat and Arabidopsis transformed with the Fhb1 sequence showed enhanced resistance to F. graminearum infection. The translation products of this gene’s homologs among plants are well conserved and might be essential to plant growth and development. Fhb1 could be useful not only for curbing FHB diseases in grain crops but also for improving other plants vulnerable to Fusarium spp. | Fhb1 |
| PRJNA554945 | Triticum aestivum Raw sequence reads | Enhanced Senescence Process is the Major Factor Stopping Spike Differentiation of Wheat Mutant ptsd1 | Illumina HiSeq 2500 | Transcriptomes and miRNomes of the wide type (WT) and mutant ptsd1 at the early spike differentiation stage. | Wheat Mutant ptsd1 |
| PRJNA578261 | Wheat anther miRNA sequencing | TaEXPB5 functions as a gene related to pollen development in thermo-sensitive male-sterility wheat with Aegilops kotschyi cytoplasm | HiSeq X Ten | To reveal the mechanism of thermosensitive male sterility in wheat. | TaEXPB5 functions |
| PRJNA915324 | Wheat RNA sequencing | New insights on the evolution of nucleolar dominance in newly resynthesized hexaploid wheat Triticum Zhukovskyi | Illumina HiSeq 2500 | RNA-seq was carried out using material from seedling betweenl AG x A hybridization F1 and AG x D hybridization F1 . | Leaf 30D |
| Run | Library Selection | Library Name | Age | Tissue | Cultivar | Sample Name | Geographic Location Name | Replicate |
|---|---|---|---|---|---|---|---|---|
| SRR24282674 | size fractionation | I-02 | 14 days | whole leaf | McNair 701 | Infected_02 | USA: Pullman | rep2 |
| SRR24282675 | size fractionation | I-01 | 14 days | whole leaf | McNair 701 | Infected_01 | USA: Pullman | rep1 |
| SRR24282676 | size fractionation | U-03 | 14 days | whole leaf | McNair 701 | Uninfected_03 | USA: Pullman | rep3 |
| SRR24282677 | size fractionation | U-02 | 14 days | whole leaf | McNair 701 | Uninfected_02 | USA: Pullman | rep2 |
| SRR24282678 | size fractionation | U-01 | 14 days | whole leaf | McNair 701 | Uninfected_01 | USA: Pullman | rep1 |
| Run | Library Selection | Library Name | Ecotype | Stage | Tissue | Cultivar | Sample Name | Geographic Location Name |
|---|---|---|---|---|---|---|---|---|
| SRR23262625 | cDNA | TaSRoot | Turkey | Tillering | Root | Yuregir-89 | TaSRoot | Turkey: Kastamonu |
| SRR23262626 | cDNA | TaCRoot | Turkey | Tillering | Root | Yuregir-89 | TaCRoot | Turkey: Kastamonu |
| SRR23262629 | cDNA | TaSLeaf | Turkey | Tillering | Leaf | Yuregir-89 | TaSLeaf | Turkey: Kastamonu |
| SRR23262630 | cDNA | TaCLeaf | Turkey | Tillering | Leaf | Yuregir-89 | TaCLeaf | Turkey: Kastamonu |
| SRR23262621 | cDNA | TtSRoot | Turkey | Tillering | Root | Kiziltan-91 | TtSRoot | Turkey: Kastamonu |
| SRR23262622 | cDNA | TtCRoot | Turkey | Tillering | Root | Kiziltan-91 | TtCRoot | Turkey: Kastamonu |
| SRR23262623 | cDNA | TtSLeaf | Turkey | Tillering | Leaf | Kiziltan-91 | TtSLeaf | Turkey: Kastamonu |
| SRR23262624 | cDNA | TtCLeaf | Turkey | Tillering | Leaf | Kiziltan-91 | TtCLeaf | Turkey: Kastamonu |
| SRR23262619 | cDNA | TmSLeaf | Turkey | Tillering | Leaf | Siyez | TmSLeaf | Turkey: Kastamonu |
| SRR23262620 | cDNA | TmCLeaf | Turkey | Tillering | Leaf | Siyez | TmCLeaf | Turkey: Kastamonu |
| SRR23262627 | cDNA | TmSRoot | Turkey | Tillering | Root | Siyez | TmSRoot | Turkey: Kastamonu |
| SRR23262628 | cDNA | TmCRoot | Turkey | Tillering | Root | Siyez | TmCRoot | Turkey: Kastamonu |
| Run | Library Selection | Library Name | Ecotype | Age | Tissue | Cultivar | Sample Name | Geographic Location Name | Treatment |
|---|---|---|---|---|---|---|---|---|---|
| SRR22989766 | PCR | (-Fe) SHOOT | NABI MOHALI | 2 weeks | SHOOT | C306 | (-Fe) SHOOT | India | Fe Deficient |
| SRR22989767 | PCR | (+Fe) SHOOT | NABI MOHALI | 2 weeks | SHOOT | C306 | (+Fe) SHOOT | India | Fe sufficient |
| SRR22989768 | PCR | (-Fe) ROOT | NABI MOHALI | 2 weeks | ROOT | C306 | (-Fe) ROOT | India | Fe Deficient |
| SRR22989769 | PCR | (+Fe) ROOT | NABI MOHALI | 2 weeks | ROOT | C306 | (+Fe) ROOT | India | Fe sufficient |
| Run | Library Selection | Library Name | Stage | Tissue | Cultivar | Sample Name | Treatment |
|---|---|---|---|---|---|---|---|
| SRR22103146 | RT-PCR | Wheat_L263_S10 | 35DPA | developing seeds | Waitoubai | Wheat_L263_10 | Normal temperature |
| SRR22103147 | RT-PCR | Wheat_L263_S09 | 28DPA | developing seeds | Waitoubai | Wheat_L263_09 | High temperature |
| SRR22103148 | RT-PCR | Wheat_L263_S08 | 28DPA | developing seeds | Waitoubai | Wheat_L263_08 | High temperature |
| SRR22103149 | RT-PCR | Wheat_L263_S07 | 28DPA | developing seeds | Waitoubai | Wheat_L263_07 | High temperature |
| SRR22103150 | RT-PCR | Wheat_L263_S06 | 28DPA | developing seeds | Waitoubai | Wheat_L263_06 | Normal temperature |
| SRR22103151 | RT-PCR | Wheat_L263_S05 | 28DPA | developing seeds | Waitoubai | Wheat_L263_05 | Normal temperature |
| SRR22103152 | RT-PCR | Wheat_L263_S04 | 28DPA | developing seeds | Waitoubai | Wheat_L263_04 | Normal temperature |
| SRR22103163 | RT-PCR | Wheat_L263_S03 | 21DPA | developing seeds | Waitoubai | Wheat_L263_03 | Normal temperature |
| SRR22103169 | RT-PCR | Wheat_L263_S15 | 35DPA | developing seeds | Waitoubai | Wheat_L263_15 | High temperature |
| SRR22103170 | RT-PCR | Wheat_L263_S14 | 35DPA | developing seeds | Waitoubai | Wheat_L263_14 | High temperature |
| SRR22103171 | RT-PCR | Wheat_L263_S13 | 35DPA | developing seeds | Waitoubai | Wheat_L263_13 | High temperature |
| SRR22103172 | RT-PCR | Wheat_L263_S12 | 35DPA | developing seeds | Waitoubai | Wheat_L263_12 | Normal temperature |
| SRR22103173 | RT-PCR | Wheat_L263_S11 | 35DPA | developing seeds | Waitoubai | Wheat_L263_11 | Normal temperature |
| SRR22103174 | RT-PCR | Wheat_L263_S02 | 21DPA | developing seeds | Waitoubai | Wheat_L263_02 | Normal temperature |
| SRR22103175 | RT-PCR | Wheat_L263_S01 | 21DPA | developing seeds | Waitoubai | Wheat_L263_01 | Normal temperature |
| Run | Library Selection | Library Name | Ecotype | Age | Tissue | Cultivar | Sample Name | Geographic Location Name |
|---|---|---|---|---|---|---|---|---|
| SRR21439292 | Oligo-dT | DAC10_2 | korea | 3 months | Spikelet | Keumgang | RNA under heat stress | South Korea: Seoul |
| SRR21439293 | Oligo-dT | DAC10_1 | korea | 3 months | Spikelet | Keumgang | RNA under heat stress | South Korea: Seoul |
| SRR21439294 | Oligo-dT | DAT10_1 | korea | 3 months | Spikelet | Keumgang | RNA under heat stress | South Korea: Seoul |
| SRR21439295 | Oligo-dT | DAC6_1 | korea | 3 months | Spikelet | Keumgang | RNA under heat stress | South Korea: Seoul |
| SRR21439296 | Oligo-dT | DAT6_1 | korea | 3 months | Spikelet | Keumgang | RNA under heat stress | South Korea: Seoul |
| Run | Library Selection | Library Name | Stage | Tissue | Cultivar | Sample Name | Geographic Location Name | Replicate |
|---|---|---|---|---|---|---|---|---|
| SRR21050554 | other | smallTFL-1-1 | heading date | ovary | Dong xuan 3 | smallTFL-1-1 | China | replicate=biological replicate 10 |
| SRR21050555 | other | smallCK-3-3 | heading date | ovary | Dong xuan 3 | smallCK-3-3 | China | replicate=biological replicate 9 |
| SRR21050556 | other | smallCK-3-2 | heading date | ovary | Dong xuan 3 | smallCK-3-2 | China | replicate=biological replicate 8 |
| SRR21050557 | other | smallCK-3-1 | heading date | ovary | Dong xuan 3 | smallCK-3-1 | China | replicate=biological replicate 7 |
| SRR21050558 | other | smallCK-2-3 | heading date | ovary | Dong xuan 3 | smallCK-2-3 | China | replicate=biological replicate 6 |
| SRR21050559 | other | smallCK-2-2 | heading date | ovary | Dong xuan 3 | smallCK-2-2 | China | replicate=biological replicate 5 |
| SRR21050560 | other | smallCK-2-1 | heading date | ovary | Dong xuan 3 | smallCK-2-1 | China | replicate=biological replicate 4 |
| SRR21050561 | other | smallCK-1-3 | heading date | ovary | Dong xuan 3 | smallCK-1-3 | China | replicate=biological replicate 3 |
| SRR21050562 | other | smallTFL-3-3 | heading date | ovary | Dong xuan 3 | smallTFL-3-3 | China | replicate=biological replicate 18 |
| SRR21050563 | other | smallTFL-3-2 | heading date | ovary | Dong xuan 3 | smallTFL-3-2 | China | replicate=biological replicate 17 |
| SRR21050564 | other | smallTFL-3-1 | heading date | ovary | Dong xuan 3 | smallTFL-3-1 | China | replicate=biological replicate 16 |
| SRR21050565 | other | smallTFL-2-3 | heading date | ovary | Dong xuan 3 | smallTFL-2-3 | China | replicate=biological replicate 15 |
| SRR21050566 | other | smallTFL-2-2 | heading date | ovary | Dong xuan 3 | smallTFL-2-2 | China | replicate=biological replicate 14 |
| SRR21050567 | other | smallTFL-2-1 | heading date | ovary | Dong xuan 3 | smallTFL-2-1 | China | replicate=biological replicate 13 |
| SRR21050568 | other | smallTFL-1-3 | heading date | ovary | Dong xuan 3 | smallTFL-1-3 | China | replicate=biological replicate 12 |
| SRR21050569 | other | smallTFL-1-2 | heading date | ovary | Dong xuan 3 | smallTFL-1-2 | China | replicate=biological replicate 11 |
| SRR21050570 | other | smallCK-1-2 | heading date | ovary | Dong xuan 3 | smallCK-1-2 | China | replicate=biological replicate 2 |
| SRR21050571 | other | smallCK-1-1 | heading date | ovary | Dong xuan 3 | smallCK-1-1 | China | replicate=biological replicate 1 |
| Run | Library Selection | Library Name | Stage | Tissue | Cultivar | Sample Name | Treatment |
|---|---|---|---|---|---|---|---|
| DRR299372 | cDNA | Leaf rust Susceptible- Mock inoculation | Two-leaf stage | leaf | HD2329 | LSM | pathogen Infection |
| DRR299371 | cDNA | Stem rust resistant- Infection treatment | Two-leaf stage | leaf | HD2329+Sr36 | SRI | Mock |
| DRR299374 | cDNA | Leaf rust Resistant- Mock inoculation | Two-leaf stage | leaf | HD2329 +Lr45 | SAMD00325718 | Mock |
| DRR299373 | cDNA | Leaf rust Susceptible- Infection treated | Two-leaf stage | leaf | HD2329 | SAMD00325717 | pathogen Infection |
| DRR299375 | cDNA | Leaf rust Resistant-Infection treated | Two-leaf stage | leaf | HD2329+Lr45 | SAMD00325719 | pathogen Infection |
| DRR299370 | cDNA | Stem rust Resistant- Mock inoculation | Two-leaf stage | leaf | HD2329 +Sr36 | SAMD00325714 | Mock |
| DRR299369 | cDNA | Stem rust susceptible- Infection treatment | Two-leaf stage | leaf | HD2329 | SAMD00325713 | pathogen Infection |
| DRR299368 | cDNA | Stem rust susceptible- Mock inoculation | Two-leaf stage | leaf | HD2329 | SAMD00325712 | Mock |
| Run | Library Name | Age | Tissue | Cultivar | Sample Name | Geographic Location Name | Treatment | Replicate |
|---|---|---|---|---|---|---|---|---|
| SRR2094581 | Infected Louise 3 | 42 days | flag leaf | Louise | Infected Louise | USA: Washington | inoculated with urediospores plus talcum powder | - |
| SRR2094580 | Infected Louise 2 | 42 days | flag leaf | Louise | Infected Louise | USA: Washington | inoculated with urediospores plus talcum powder | - |
| SRR2094579 | Infected Louise 1 | 42 days | flag leaf | Louise | Infected Louise | USA: Washington | inoculated with urediospores plus talcum powder | - |
| SRR2094591 | Uninfected Louise 3 | 42 days | flag leaf | Louise | Uninfected Louise | USA: Washington | mock inoculated with talcum powder | - |
| SRR2094590 | Uninfected Louise 2 | 42 days | flag leaf | Louise | Uninfected Louise | USA: Washington | mock inoculated with talcum powder | - |
| SRR2094588 | Uninfected Louise 1 | 42 days | flag leaf | Louise | Uninfected Louise | USA: Washington | mock inoculated with talcum powder | - |
| SRR2094566 | Infected Penawawa 3 | 42 days | flag leaf | Penawawa | Infected Penawawa | USA: Washington | inoculated with urediospores plus talcum powder | - |
| SRR2094565 | Infected Penawawa 2 | 42 days | flag leaf | Penawawa | Infected Penawawa | USA: Washington | inoculated with urediospores plus talcum powder | - |
| SRR2094492 | Infected Penawawa 1 | 42 days | flag leaf | Penawawa | Infected Penawawa | USA: Washington | inoculated with urediospores plus talcum powder | - |
| SRR2094586 | Uninfected Penawawa 3 | 42 days | flag leaf | Penawawa | Uninfected Penawawa | USA: Washington | mock inoculated with talcum powder | - |
| SRR2094585 | Uninfected Penawawa 2 | 42 days | flag leaf | Penawawa | Uninfected Penawawa | USA: Washington | mock inoculated with talcum powder | - |
| SRR2094584 | Uninfected Penawawa 1 | 42 days | flag leaf | Penawawa | Uninfected Penawawa | USA: Washington | mock inoculated with talcum powder | - |
| SRR19441421 | I4_AvS_Pst78_sRNA | 22 days | whole shoot | Avocet Susceptible | I4_AvS_Pst78_18 | USA: Washington | 2 week old plants inoculated with Pst78 spores; dew chamber 24h; incubated 7 days 15C day/15C night | Infected 4 |
| SRR19441422 | I3_AvS_Pst78_sRNA | 22 days | whole shoot | Avocet Susceptible | I3_AvS_Pst78_18 | USA: Washington | 2 week old plants inoculated with Pst78 spores; dew chamber 24h; incubated 7 days 15C day/15C night | Infected 3 |
| SRR19441423 | I2_AvS_Pst78_sRNA | 22 days | whole shoot | Avocet Susceptible | I2_AvS_Pst78_18 | USA: Washington | 2 week old plants inoculated with Pst78 spores; dew chamber 24h; incubated 7 days 15C day/15C night | Infected 2 |
| SRR19441424 | I1_AvS_Pst78_sRNA | 22 days | whole shoot | Avocet Susceptible | I1_AvS_Pst78_18 | USA: Washington | 2 week old plants inoculated with Pst78 spores; dew chamber 24h; incubated 7 days 15C day/15C night | Infected 1 |
| SRR19441425 | U4_AvS_sRNA | 22 days | whole shoot | Avocet Susceptible | U4_AvS_18 | USA: Washington | 2 week old plants mock-inoculated with talc; dew chamber 24h; incubated 7 days 15C day/15C night | Uninfected 4 |
| SRR19441426 | U3_AvS_sRNA | 22 days | whole shoot | Avocet Susceptible | U3_AvS_18 | USA: Washington | 2 week old plants mock-inoculated with talc; dew chamber 24h; incubated 7 days 15C day/15C night | Uninfected 3 |
| SRR19441427 | U2_AvS_sRNA | 22 days | whole shoot | Avocet Susceptible | U2_AvS_18 | USA: Washington | 2 week old plants mock-inoculated with talc; dew chamber 24h; incubated 7 days 15C day/15C night | Uninfected 2 |
| SRR19441428 | U1_AvS_sRNA | 22 days | whole shoot | Avocet Susceptible | U1_AvS_18 | USA: Washington | 2 week old plants mock-inoculated with talc; dew chamber 24h; incubated 7 days 15C day/15C night | Uninfected 1 |
| Run | Library Selection | Library Name | Stage | Tissue | Cultivar | Sample Name | Geographic Location Name | Treatment | Replicate |
|---|---|---|---|---|---|---|---|---|---|
| SRR19238050 | size fractionation | DT-T-1 | seedling stage | root | ZM13 | DT-T-1 | China:jinzhong | drought | biological replicate 1 |
| SRR19238051 | size fractionation | DT-CK-3 | seedling stage | root | ZM13 | DT-CK-3 | China:jinzhong | normal | biological replicate 3 |
| SRR19238052 | size fractionation | DT-CK-2 | seedling stage | root | ZM13 | DT-CK-2 | China:jinzhong | normal | biological replicate 2 |
| SRR19238053 | size fractionation | DT-CK-1 | seedling stage | root | ZM13 | DT-CK-1 | China:jinzhong | normal | biological replicate 1 |
| SRR19238054 | size fractionation | DS-T-3 | seedling stage | root | JM38 | DS-T-3 | China:jinzhong | drought | biological replicate 3 |
| SRR19238055 | size fractionation | DS-T-2 | seedling stage | root | JM38 | DS-T-2 | China:jinzhong | drought | biological replicate 2 |
| SRR19238056 | size fractionation | DS-T-1 | seedling stage | root | JM38 | DS-T-1 | China:jinzhong | drought | biological replicate 1 |
| SRR19238057 | size fractionation | DS-CK-3 | seedling stage | root | JM38 | DS-CK-3 | China:jinzhong | normal | biological replicate 3 |
| SRR19238058 | size fractionation | DT-T-3 | seedling stage | root | ZM13 | DT-T-3 | China:jinzhong | drought | biological replicate 3 |
| SRR19238059 | size fractionation | DT-T-2 | seedling stage | root | ZM13 | DT-T-2 | China:jinzhong | drought | biological replicate 2 |
| SRR19238060 | size fractionation | DS-CK-2 | seedling stage | root | JM38 | DS-CK-2 | China:jinzhong | normal | biological replicate 2 |
| SRR19238061 | size fractionation | DS-CK-1 | seedling stage | root | JM38 | DS-CK-1 | China:jinzhong | normal | biological replicate 1 |
| Run | Library Selection | Library Name | Stage | Tissue | Sample Name | Geographic Location Name |
|---|---|---|---|---|---|---|
| SRR17712120 | PCR | CG_6h_1 | Trileaf stage | Whole seedlings | CG_6h_1 | China:shannxi |
| SRR17712121 | PCR | CG_1h_3 | Trileaf stage | Whole seedlings | CG_1h_3 | China:shannxi |
| SRR17712122 | PCR | CG_1h_2 | Trileaf stage | Whole seedlings | CG_1h_2 | China:shannxi |
| SRR17712123 | PCR | CG_1h_1 | Trileaf stage | Whole seedlings | CG_1h_1 | China:shannxi |
| SRR17712124 | PCR | CG_12h_3 | Trileaf stage | Whole seedlings | CG_12h_3 | China:shannxi |
| SRR17712125 | PCR | CG_12h_2 | Trileaf stage | Whole seedlings | CG_12h_2 | China:shannxi |
| SRR17712126 | PCR | DD_6h_3 | Trileaf stage | Whole seedlings | DD_6h_3 | China:shannxi |
| SRR17712127 | PCR | DD_6h_2 | Trileaf stage | Whole seedlings | DD_6h_2 | China:shannxi |
| SRR17712128 | PCR | DD_6h_1 | Trileaf stage | Whole seedlings | DD_6h_1 | China:shannxi |
| SRR17712129 | PCR | DD_1h_3 | Trileaf stage | Whole seedlings | DD_1h_3 | China:shannxi |
| SRR17712130 | PCR | DD_1h_2 | Trileaf stage | Whole seedlings | DD_1h_2 | China:shannxi |
| SRR17712131 | PCR | DD_1h_1 | Trileaf stage | Whole seedlings | DD_1h_1 | China:shannxi |
| SRR17712132 | PCR | CG_12h_1 | Trileaf stage | Whole seedlings | CG_12h_1 | China:shannxi |
| SRR17712133 | PCR | DD_12h_3 | Trileaf stage | Whole seedlings | DD_12h_3 | China:shannxi |
| SRR17712134 | PCR | DD_12h_2 | Trileaf stage | Whole seedlings | DD_12h_2 | China:shannxi |
| SRR17712135 | PCR | DD_12h_1 | Trileaf stage | Whole seedlings | DD_12h_1 | China:shannxi |
| SRR17712136 | PCR | DD_0h_3 | Trileaf stage | Whole seedlings | DD_0h_3 | China:shannxi |
| SRR17712137 | PCR | DD_0h_2 | Trileaf stage | Whole seedlings | DD_0h_2 | China:shannxi |
| SRR17712138 | PCR | DD_0h_1 | Trileaf stage | Whole seedlings | DD_0h_1 | China:shannxi |
| SRR17712139 | PCR | DM_6h_3 | Trileaf stage | Whole seedlings | DM_6h_3 | China:shannxi |
| SRR17712140 | PCR | DM_6h_2 | Trileaf stage | Whole seedlings | DM_6h_2 | China:shannxi |
| SRR17712141 | PCR | DM_6h_1 | Trileaf stage | Whole seedlings | DM_6h_1 | China:shannxi |
| SRR17712142 | PCR | DM_1h_3 | Trileaf stage | Whole seedlings | DM_1h_3 | China:shannxi |
| SRR17712143 | PCR | CG_0h_3 | Trileaf stage | Whole seedlings | CG_0h_3 | China:shannxi |
| SRR17712144 | PCR | DM_1h_2 | Trileaf stage | Whole seedlings | DM_1h_2 | China:shannxi |
| SRR17712145 | PCR | DM_1h_1 | Trileaf stage | Whole seedlings | DM_1h_1 | China:shannxi |
| SRR17712146 | PCR | DM_12h_3 | Trileaf stage | Whole seedlings | DM_12h_3 | China:shannxi |
| SRR17712147 | PCR | DM_12h_2 | Trileaf stage | Whole seedlings | DM_12h_2 | China:shannxi |
| SRR17712148 | PCR | DM_12h_1 | Trileaf stage | Whole seedlings | DM_12h_1 | China:shannxi |
| SRR17712149 | PCR | DM_0h_3 | Trileaf stage | Whole seedlings | DM_0h_3 | China:shannxi |
| SRR17712150 | PCR | DM_0h_2 | Trileaf stage | Whole seedlings | DM_0h_2 | China:shannxi |
| SRR17712151 | PCR | DM_0h_1 | Trileaf stage | Whole seedlings | DM_0h_1 | China:shannxi |
| SRR17712152 | PCR | CG_6h_3 | Trileaf stage | Whole seedlings | CG_6h_3 | China:shannxi |
| SRR17712153 | PCR | CG_6h_2 | Trileaf stage | Whole seedlings | CG_6h_2 | China:shannxi |
| SRR17712154 | PCR | CG_0h_2 | Trileaf stage | Whole seedlings | CG_0h_2 | China:shannxi |
| SRR17712155 | PCR | CG_0h_1 | Trileaf stage | Whole seedlings | CG_0h_1 | China:shannxi |
| Run | Library Selection | Library Name | Tissue | Cultivar | Sample Name | Treatment | Replicate |
|---|---|---|---|---|---|---|---|
| SRR17316475 | size fractionation | GSM5750485 | leaves | Akteur | GSM5750485 | Non inoculated | rep4 |
| SRR17316476 | size fractionation | GSM5750484 | leaves | Akteur | GSM5750484 | Non inoculated | rep3 |
| SRR17316477 | size fractionation | GSM5750483 | leaves | Akteur | GSM5750483 | Non inoculated | rep2 |
| SRR17316478 | size fractionation | GSM5750482 | leaves | Akteur | GSM5750482 | Non inoculated | rep1 |
| SRR17316479 | size fractionation | GSM5750481 | leaves | Akteur | GSM5750481 | Non inoculated | rep4 |
| SRR17316480 | size fractionation | GSM5750480 | leaves | Akteur | GSM5750480 | Non inoculated | rep3 |
| SRR17316481 | size fractionation | GSM5750479 | leaves | Akteur | GSM5750479 | Non inoculated | rep2 |
| SRR17316482 | size fractionation | GSM5750478 | leaves | Akteur | GSM5750478 | Non inoculated | rep1 |
| SRR17316483 | size fractionation | GSM5750477 | leaves | Akteur | GSM5750477 | WDV infected | rep4 |
| SRR17316484 | size fractionation | GSM5750476 | leaves | Akteur | GSM5750476 | WDV infected | rep3 |
| SRR17316485 | size fractionation | GSM5750475 | leaves | Akteur | GSM5750475 | WDV infected | rep2 |
| SRR17316486 | size fractionation | GSM5750474 | leaves | Akteur | GSM5750474 | WDV infected | rep1 |
| SRR17316487 | size fractionation | GSM5750473 | leaves | Akteur | GSM5750473 | WDV infected | rep4 |
| SRR17316488 | size fractionation | GSM5750472 | leaves | Akteur | GSM5750472 | WDV infected | rep3 |
| SRR17316489 | size fractionation | GSM5750471 | leaves | Akteur | GSM5750471 | WDV infected | rep2 |
| SRR17316490 | size fractionation | GSM5750470 | leaves | Akteur | GSM5750470 | WDV infected | rep1 |
| SRR17316491 | size fractionation | GSM5750469 | leaves | Akteur | GSM5750469 | WDV infected | rep4 |
| SRR17316492 | size fractionation | GSM5750468 | leaves | Akteur | GSM5750468 | WDV infected | rep3 |
| SRR17316493 | size fractionation | GSM5750467 | leaves | Akteur | GSM5750467 | WDV infected | rep2 |
| SRR17316494 | size fractionation | GSM5750466 | leaves | Akteur | GSM5750466 | WDV infected | rep1 |
| SRR17316495 | size fractionation | GSM5750465 | leaves | Akteur | GSM5750465 | Non inoculated | rep4 |
| SRR17316496 | size fractionation | GSM5750464 | leaves | Akteur | GSM5750464 | Non inoculated | rep3 |
| SRR17316497 | size fractionation | GSM5750463 | leaves | Akteur | GSM5750463 | Non inoculated | rep2 |
| SRR17316498 | size fractionation | GSM5750462 | leaves | Akteur | GSM5750462 | Non inoculated | rep1 |
| SRR17316499 | size fractionation | GSM5750533 | leaves | Akteur | GSM5750533 | Non inoculated | rep4 |
| SRR17316500 | size fractionation | GSM5750532 | leaves | Svitava | GSM5750532 | Non inoculated | rep3 |
| SRR17316501 | size fractionation | GSM5750531 | leaves | Svitava | GSM5750531 | Non inoculated | rep2 |
| SRR17316502 | size fractionation | GSM5750530 | leaves | Svitava | GSM5750530 | Non inoculated | rep1 |
| SRR17316503 | size fractionation | GSM5750529 | leaves | Svitava | GSM5750529 | Non inoculated | rep4 |
| SRR17316504 | size fractionation | GSM5750528 | leaves | Svitava | GSM5750528 | Non inoculated | rep3 |
| SRR17316505 | size fractionation | GSM5750527 | leaves | Svitava | GSM5750527 | Non inoculated | rep2 |
| SRR17316506 | size fractionation | GSM5750526 | leaves | Svitava | GSM5750526 | Non inoculated | rep1 |
| SRR17316507 | size fractionation | GSM5750525 | leaves | Svitava | GSM5750525 | Non inoculated | rep4 |
| SRR17316508 | size fractionation | GSM5750524 | leaves | Svitava | GSM5750524 | Non inoculated | rep3 |
| SRR17316509 | size fractionation | GSM5750523 | leaves | Svitava | GSM5750523 | Non inoculated | rep2 |
| SRR17316510 | size fractionation | GSM5750522 | leaves | Svitava | GSM5750522 | Non inoculated | rep1 |
| SRR17316511 | size fractionation | GSM5750521 | leaves | Svitava | GSM5750521 | WDV infected | rep4 |
| SRR17316512 | size fractionation | GSM5750520 | leaves | Svitava | GSM5750520 | WDV infected | rep3 |
| SRR17316513 | size fractionation | GSM5750519 | leaves | Svitava | GSM5750519 | WDV infected | rep2 |
| SRR17316514 | size fractionation | GSM5750518 | leaves | Svitava | GSM5750518 | WDV infected | rep1 |
| SRR17316515 | size fractionation | GSM5750517 | leaves | Svitava | GSM5750517 | WDV infected | rep4 |
| SRR17316516 | size fractionation | GSM5750516 | leaves | Svitava | GSM5750516 | WDV infected | rep3 |
| SRR17316517 | size fractionation | GSM5750515 | leaves | Svitava | GSM5750515 | WDV infected | rep2 |
| SRR17316518 | size fractionation | GSM5750514 | leaves | Svitava | GSM5750514 | WDV infected | rep1 |
| SRR17316519 | size fractionation | GSM5750513 | leaves | Svitava | GSM5750513 | WDV infected | rep4 |
| SRR17316520 | size fractionation | GSM5750512 | leaves | Svitava | GSM5750512 | WDV infected | rep3 |
| SRR17316521 | size fractionation | GSM5750511 | leaves | Svitava | GSM5750511 | WDV infected | rep2 |
| SRR17316522 | size fractionation | GSM5750510 | leaves | Svitava | GSM5750510 | WDV infected | rep1 |
| SRR17316571 | size fractionation | GSM5750509 | leaves | Fengyou | GSM5750509 | Non inoculated | rep4 |
| SRR17316572 | size fractionation | GSM5750508 | leaves | Fengyou | GSM5750508 | Non inoculated | rep3 |
| SRR17316573 | size fractionation | GSM5750507 | leaves | Fengyou | GSM5750507 | Non inoculated | rep2 |
| SRR17316574 | size fractionation | GSM5750506 | leaves | Fengyou | GSM5750506 | Non inoculated | rep1 |
| SRR17316575 | size fractionation | GSM5750505 | leaves | Fengyou | GSM5750505 | WDV infected | rep4 |
| SRR17316576 | size fractionation | GSM5750504 | leaves | Fengyou | GSM5750504 | WDV infected | rep3 |
| SRR17316577 | size fractionation | GSM5750503 | leaves | Fengyou | GSM5750503 | WDV infected | rep2 |
| SRR17316578 | size fractionation | GSM5750502 | leaves | Fengyou | GSM5750502 | WDV infected | rep1 |
| SRR17316579 | size fractionation | GSM5750501 | leaves | Fengyou | GSM5750501 | WDV infected | rep4 |
| SRR17316580 | size fractionation | GSM5750500 | leaves | Fengyou | GSM5750500 | WDV infected | rep3 |
| SRR17316581 | size fractionation | GSM5750499 | leaves | Fengyou | GSM5750499 | WDV infected | rep2 |
| SRR17316582 | size fractionation | GSM5750498 | leaves | Fengyou | GSM5750498 | WDV infected | rep1 |
| SRR17316583 | size fractionation | GSM5750497 | leaves | Fengyou | GSM5750497 | WDV infected | rep4 |
| SRR17316584 | size fractionation | GSM5750496 | leaves | Fengyou | GSM5750496 | WDV infected | rep3 |
| SRR17316585 | size fractionation | GSM5750495 | leaves | Fengyou | GSM5750495 | WDV infected | rep2 |
| SRR17316586 | size fractionation | GSM5750494 | leaves | Fengyou | GSM5750494 | WDV infected | rep1 |
| SRR17316587 | size fractionation | GSM5750493 | leaves | Fengyou | GSM5750493 | Non inoculated | rep4 |
| SRR17316588 | size fractionation | GSM5750492 | leaves | Fengyou | GSM5750492 | Non inoculated | rep3 |
| SRR17316589 | size fractionation | GSM5750491 | leaves | Fengyou | GSM5750491 | Non inoculated | rep2 |
| SRR17316590 | size fractionation | GSM5750490 | leaves | Fengyou | GSM5750490 | Non inoculated | rep1 |
| SRR17316591 | size fractionation | GSM5750489 | leaves | Fengyou | GSM5750489 | Non inoculated | rep4 |
| SRR17316592 | size fractionation | GSM5750488 | leaves | Fengyou | GSM5750488 | Non inoculated | rep3 |
| SRR17316593 | size fractionation | GSM5750487 | leaves | Fengyou | GSM5750487 | Non inoculated | rep2 |
| SRR17316594 | size fractionation | GSM5750486 | leaves | Fengyou | GSM5750486 | Non inoculated | rep1 |
| Run | Library Selection | Age | Tissue | Cultivar | Sample Name | Geographic Location Name |
|---|---|---|---|---|---|---|
| SRR13619124 | PCR | 10 days | roots and leaves | wheat | Y174 | China:Anhui |
| SRR13619125 | PCR | 10 days | roots and leaves | wheat | Y174 | China:Anhui |
| SRR13619126 | PCR | 10 days | roots and leaves | wheat | Y174 | China:Anhui |
| SRR13619127 | PCR | 10 days | roots and leaves | wheat | Y174 | China:Anhui |
| SRR13619128 | PCR | 10 days | roots and leaves | wheat | Y174 | China:Anhui |
| SRR13619129 | PCR | 10 days | roots and leaves | wheat | Y174 | China:Anhui |
| SRR13619130 | PCR | 10 days | roots and leaves | wheat | Y174 | China:Anhui |
| SRR13619131 | PCR | 10 days | roots and leaves | wheat | Y174 | China:Anhui |
| SRR13619132 | PCR | 10 days | roots and leaves | wheat | Y174 | China:Anhui |
| SRR13619133 | PCR | 10 days | roots and leaves | wheat | Y174 | China:Anhui |
| SRR13619134 | PCR | 10 days | roots and leaves | wheat | Y174 | China:Anhui |
| SRR13619135 | PCR | 10 days | roots and leaves | wheat | Y174 | China:Anhui |
| Run | Library Selection | Library Name | Ecotype | Stage | Tissue | Sample Name | Geographic Location Name |
|---|---|---|---|---|---|---|---|
| SRR13222412 | PCR | SMI-1 | Sumai3 | flowering phase | spikelet and rachis | SM | China |
| SRR13222413 | PCR | SMM-3 | Sumai3 | flowering phase | spikelet and rachis | SM | China |
| SRR13222414 | PCR | SMM-2 | Sumai3 | flowering phase | spikelet and rachis | SM | China |
| SRR13222415 | PCR | SMM-1 | Sumai3 | flowering phase | spikelet and rachis | SM | China |
| SRR13222416 | PCR | CSI-3 | Chinese spring | flowering phase | spikelet and rachis | CS | China |
| SRR13222417 | PCR | CSI-2 | Chinese spring | flowering phase | spikelet and rachis | CS | China |
| SRR13222418 | PCR | CSI-1 | Chinese spring | flowering phase | spikelet and rachis | CS | China |
| SRR13222419 | PCR | CSM-3 | Chinese spring | flowering phase | spikelet and rachis | CS | China |
| SRR13222420 | PCR | SMI-3 | Sumai3 | flowering phase | spikelet and rachis | SM | China |
| SRR13222421 | PCR | SMI-2 | Sumai3 | flowering phase | spikelet and rachis | SM | China |
| SRR13222422 | PCR | CSM-2 | Chinese spring | flowering phase | spikelet and rachis | CS | China |
| SRR13222423 | PCR | CSM-1 | Chinese spring | flowering phase | spikelet and rachis | CS | China |
| Run | Library Selection | Stage | Tissue | Sample Name | Treatment |
|---|---|---|---|---|---|
| SRR12419568 | size fractionation | jointing stage | crown tissue colleected at jointing stage | GSM4717211 | Non inoculated |
| SRR12419567 | size fractionation | spring greenup stage | crown tissue colleected at spring greenup stage | GSM4717210 | Non inoculated |
| SRR12419566 | size fractionation | winter dormancy stage | crown tissue colleected at winter dormancy stage | GSM4717209 | Non inoculated |
| SRR12419565 | size fractionation | three leaf stage | crown tissue collected at the three leaf stage | GSM4717208 | Non inoculated |
| Run | Library Selection | Library Name | Stage | Tissue | Cultivar | Sample Name | Geographic Location Name | Treatment | Replicate |
|---|---|---|---|---|---|---|---|---|---|
| SRR12102896 | size fractionation | sRNA-seq_spikelet_rep3 | flowering | Spikelet | Chinese spriing | Spikelet_smallRNA_3 | China:Wuhan | small RNA-seq of wheat | Replicate 3 |
| SRR12102897 | size fractionation | sRNA-seq_spikelet_rep2 | flowering | Spikelet | Chinese spriing | Spikelet_smallRNA_2 | China:Wuhan | small RNA-seq of wheat | Replicate 2 |
| SRR12102898 | size fractionation | sRNA-seq_spikelet_rep1 | flowering | Spikelet | Chinese spriing | Spikelet_smallRNA_1 | China:Wuhan | small RNA-seq of wheat | Replicate 1 |
| Run | Library Selection | Library Name | Age | Tissue | Cultivar | Sample Name | Geographic Location Name | Replicate |
|---|---|---|---|---|---|---|---|---|
| SRR10317096 | PCR | SF1-1 | early uninucleate | anther | wheat TCMS | SF1-1 | China:shannxi | biological replicate1 |
| SRR10317097 | PCR | SS3-3 | binucleate | anther | wheat TCMS | SS3-3 | China:shannxi | biological replicate3 |
| SRR10317098 | PCR | SS3-2 | binucleate | anther | wheat TCMS | SS3-2 | China:shannxi | biological replicate2 |
| SRR10317099 | PCR | SS3-1 | binucleate | anther | wheat TCMS | SS3-1 | China:shannxi | biological replicate1 |
| SRR10317100 | PCR | SS2-3 | late uninucleate | anther | wheat TCMS | SS2-3 | China:shannxi | biological replicate3 |
| SRR10317101 | PCR | SS2-2 | late uninucleate | anther | wheat TCMS | SS2-2 | China:shannxi | biological replicate2 |
| SRR10317102 | PCR | SS2-1 | late uninucleate | anther | wheat TCMS | SS2-1 | China:shannxi | biological replicate1 |
| SRR10317103 | PCR | SS1-3 | early uninucleate | anther | wheat TCMS | SS1-3 | China:shannxi | biological replicate3 |
| SRR10317104 | PCR | SF3-3 | binucleate | anther | wheat TCMS | SF3-3 | China:shannxi | biological replicate3 |
| SRR10317105 | PCR | SF3-2 | binucleate | anther | wheat TCMS | SF3-2 | China:shannxi | biological replicate2 |
| SRR10317106 | PCR | SF3-1 | binucleate | anther | wheat TCMS | SF3-1 | China:shannxi | biological replicate1 |
| SRR10317107 | PCR | SF2-3 | late uninucleate | anther | wheat TCMS | SF2-3 | China:shannxi | biological replicate3 |
| SRR10317108 | PCR | SF2-2 | late uninucleate | anther | wheat TCMS | SF2-2 | China:shannxi | biological replicate2 |
| SRR10317109 | PCR | SF2-1 | late uninucleate | anther | wheat TCMS | SF2-1 | China:shannxi | biological replicate1 |
| SRR10317110 | PCR | SF1-3 | early uninucleate | anther | wheat TCMS | SF1-3 | China:shannxi | biological replicate3 |
| SRR10317111 | PCR | SF1-2 | early uninucleate | anther | wheat TCMS | SF1-2 | China:shannxi | biological replicate2 |
| SRR10317112 | PCR | SS1-2 | early uninucleate | anther | wheat TCMS | SS1-2 | China:shannxi | biological replicate2 |
| SRR10317113 | PCR | SS1-1 | early uninucleate | anther | wheat TCMS | SS1-1 | China:shannxi | biological replicate1 |
| Run | Library Selection | Library Name | Stage | Tissue | Cultivar | Sample Name | Geographic Location Name | Treatment |
|---|---|---|---|---|---|---|---|---|
| SRR10051481 | cDNA | N0_17D_1 | 17_days_after_anthesis | seed | Zhengmai119 | miRNA_LN17D1 | China:Zhengzhou | different nitrogen level |
| SRR10051482 | cDNA | Z_17D_3 | 17_days_after_anthesis | seed | Zhengmai119 | miRNA_HN17D3 | China:Zhengzhou | different nitrogen level |
| SRR10051483 | cDNA | Z_17D_2 | 17_days_after_anthesis | seed | Zhengmai119 | miRNA_HN17D2 | China:Zhengzhou | different nitrogen level |
| SRR10051484 | cDNA | Z_17D_1 | 17_days_after_anthesis | seed | Zhengmai119 | miRNA_HN17D1 | China:Zhengzhou | - |
| SRR10051485 | cDNA | N0_6D_3 | 6_days_after_anthesis | seed | Zhengmai119 | miRNA_LN6D3 | China:Zhengzhou | - |
| SRR10051486 | cDNA | N0_6D_2 | 6_days_after_anthesis | seed | Zhengmai119 | miRNA_LN6D2 | China:Zhengzhou | different nitrogen level |
| SRR10051487 | cDNA | N0_6D_1 | 6_days_after_anthesis | seed | Zhengmai119 | miRNA_LN6D1 | China:Zhengzhou | different nitrogen level |
| SRR10051488 | cDNA | Z_6D_3 | 6_days_after_anthesis | seed | Zhengmai119 | miRNA_HN6D3 | China:Zhengzhou | - |
| SRR10051489 | cDNA | N0_27D_3 | 27_days_after_anthesis | seed | Zhengmai119 | miRNA_LN27D3 | China:Zhengzhou | different nitrogen level |
| SRR10051490 | cDNA | N0_27D_2 | 27_days_after_anthesis | seed | Zhengmai119 | miRNA_LN27D2 | China:Zhengzhou | different nitrogen level |
| SRR10051491 | cDNA | N0_27D_1 | 27_days_after_anthesis | seed | Zhengmai119 | miRNA_LN27D1 | China:Zhengzhou | different nitrogen level |
| SRR10051492 | cDNA | Z_27D_3 | 27_days_after_anthesis | seed | Zhengmai119 | miRNA_HN27D3 | China:Zhengzhou | different nitrogen level |
| SRR10051493 | cDNA | Z_27D_2 | 27_days_after_anthesis | seed | Zhengmai119 | miRNA_HN27D2 | China:Zhengzhou | different nitrogen level |
| SRR10051494 | cDNA | Z_27D_1 | 27_days_after_anthesis | seed | Zhengmai119 | miRNA_HN27D1 | China:Zhengzhou | different nitrogen level |
| SRR10051495 | cDNA | N0_17D_3 | 17_days_after_anthesis | seed | Zhengmai119 | miRNA_LN17D3 | China:Zhengzhou | different nitrogen level |
| SRR10051496 | cDNA | N0_17D_2 | 17_days_after_anthesis | seed | Zhengmai119 | miRNA_LN17D2 | China:Zhengzhou | different nitrogen level |
| SRR10051497 | cDNA | Z_6D_2 | 6_days_after_anthesis | seed | Zhengmai119 | miRNA_HN6D2 | China:Zhengzhou | - |
| SRR10051498 | cDNA | Z_6D_1 | 6_days_after_anthesis | seed | Zhengmai119 | miRNA_HN6D1 | China:Zhengzhou | different nitrogen level |
| Run | Library Name | Age | Tissue | Cultivar | Sample Name | Geographic Location Name | Treatment |
|---|---|---|---|---|---|---|---|
| SRR9712609 | Tae Bgt 96224 | 12 days | leaf | Chinese Spring | Tae Bgt 96224 | Switzerland: Zurich | Blumeria graminis infection |
| SRR9712610 | Tae Bgt 94202 | 12 days | leaf | Chinese Spring | Tae Bgt 94202 | Switzerland: Zurich | Blumeria graminis infection |
| SRR9712611 | Tae Csuninf | 12 days | leaf | Chinese Spring | Tae Csuninf | Switzerland: Zurich | - |
| SRR9712612 | Tae Bgt JIW2 | 12 days | leaf | Chinese Spring | Tae Bgt JIW2 | Switzerland: Zurich | Blumeria graminis infection |
| Run | Library Selection | Stage | Tissue | Cultivar | Sample Name | Geographic Location Name |
|---|---|---|---|---|---|---|
| SRR9696790 | RT-PCR | late double ridge stage | young spikes | guomai301 | WT-ys-S2a | China:Zhengzhou |
| SRR9696791 | RT-PCR | late double ridge stage | young stem tips | guomai301 | WT-st-S1c | China:Zhengzhou |
| SRR9696792 | RT-PCR | late double ridge stage | young stem tips | guomai301 | WT-st-S1b | China:Zhengzhou |
| SRR9696793 | RT-PCR | late double ridge stage | young stem tips | guomai301 | WT-st-S1a | China:Zhengzhou |
| SRR9696794 | RT-PCR | late double ridge stage | young stem tips | guomai301 | ptsd1-st-S3b | China:Zhengzhou |
| SRR9696795 | RT-PCR | late double ridge stage | young stem tips | guomai301 | ptsd1-st-S3a | China:Zhengzhou |
| SRR9696796 | RT-PCR | late double ridge stage | young spikes | guomai301 | WT-ys-S2c | China:Zhengzhou |
| SRR9696797 | RT-PCR | late double ridge stage | young spikes | guomai301 | WT-ys-S2b | China:Zhengzhou |
| SRR9696798 | RT-PCR | late double ridge stage | young spikes | guomai301 | ptsd1-ys-S4a | China:Zhengzhou |
| SRR9696799 | RT-PCR | late double ridge stage | young stem tips | guomai301 | ptsd1-st-S3c | China:Zhengzhou |
| SRR9696800 | RT-PCR | late double ridge stage | young spikes | guomai301 | ptsd1-ys-S4c | China:Zhengzhou |
| SRR9696801 | RT-PCR | late double ridge stage | young spikes | guomai301 | ptsd1-ys-S4b | China:Zhengzhou |
| Run | Library Selection | Library Name | Stage | Tissue | Cultivar | Sample Name | Geographic Location Name |
|---|---|---|---|---|---|---|---|
| SRR9648458 | RT-PCR | ys_1_miRNA | spike differentiation stage 5 | young spikes | Guomai 301 | ys_1_miRNA | China:Zhengzhou |
| SRR9648459 | RT-PCR | ys_3_miRNA | spike differentiation stage 5 | young spikes | Guomai 301 | ys_3_miRNA | China:Zhengzhou |
| SRR9648460 | RT-PCR | ys_2_miRNA | spike differentiation stage 5 | young spikes | Guomai 301 | ys_2_miRNA | China:Zhengzhou |
| SRR9648461 | RT-PCR | st_2_miRNA | spike differentiation stage 5 | stem tips | Guomai 301 | st_2_miRNA | China:Zhengzhou |
| SRR9648462 | RT-PCR | st_1_miRNA | spike differentiation stage 5 | stem tips | Guomai 301 | st_1_miRNA | China:Zhengzhou |
| SRR9648463 | RT-PCR | tp_1_miRNA | 3-leaf to 4-leaf stage | tiller primordia | Guomai 301 | tp_1_miRNA | China:Zhengzhou |
| SRR9648464 | RT-PCR | st_3_miRNA | spike differentiation stage 5 | stem tips | Guomai 301 | st_3_miRNA | China:Zhengzhou |
| SRR9648465 | RT-PCR | tp_3_miRNA | 3-leaf to 4-leaf stage | tiller primordia | Guomai 301 | tp_3_miRNA | China:Zhengzhou |
| SRR9648466 | RT-PCR | tp_2_miRNA | 3-leaf to 4-leaf stage | tiller primordia | Guomai 301 | tp_2_miRNA | China:Zhengzhou |
| Run | Library Selection | Genotype | Stage | Tissue | Cultivar | Sample Name |
|---|---|---|---|---|---|---|
| SRR8467485 | size fractionation | wild type | jointing stage | leaf | winter wheat Shimai 22 | GSM3573290 |
| SRR8467484 | size fractionation | wild type | spring greenup stage | leaf | winter wheat Shimai 22 | GSM3573289 |
| SRR8467483 | size fractionation | wild type | winter dormancy stage | leaf | winter wheat Shimai 22 | GSM3573288 |
| SRR8467482 | size fractionation | wild type | winter wheat collected at three leaf stage | leaf | winter wheat Shimai 22 | GSM3573287 |
| Run | Library Selection | Library Name | Sample Name |
|---|---|---|---|
| ERR2777611 | size fractionation | L001_R1_001 | SAMEA4883093 |
| ERR2777610 | size fractionation | L001_R1_001 | SAMEA4883092 |
| ERR2777609 | size fractionation | L001_R1_001 | SAMEA4883091 |
| ERR2777608 | size fractionation | L001_R1_001 | SAMEA4883090 |
| ERR2777607 | size fractionation | L001_R1_001 | SAMEA4883089 |
| ERR2777606 | size fractionation | L001_R1_001 | SAMEA4883088 |
| ERR2777605 | size fractionation | L001_R1_001 | SAMEA4883087 |
| ERR2777604 | size fractionation | L001_R1_001 | SAMEA4883086 |
| ERR2777603 | size fractionation | L001_R1_001 | SAMEA4883085 |
| ERR2777602 | size fractionation | L001_R1_001 | SAMEA4883084 |
| ERR2777601 | size fractionation | L001_R1_001 | SAMEA4883083 |
| ERR2777600 | size fractionation | L001_R1_001 | SAMEA4883082 |
| ERR2777599 | size fractionation | L001_R1_001 | SAMEA4883081 |
| ERR2777598 | size fractionation | L001_R1_001 | SAMEA4883080 |
| ERR2777597 | size fractionation | L001_R1_001 | SAMEA4883079 |
| Run | Library Name | Ecotype | Stage | Tissue | Cultivar | Sample Name | Geographic Location Name | Lat_Lon | Treatment | Replicate |
|---|---|---|---|---|---|---|---|---|---|---|
| SRR8612151 | LK120 | hexaploid | three leaf stage | root | Kenong9204 | sample_6_deficient_K_120h_root | China | 38.82 N 115.44 E | deficient-K treatment for 120h | LK_120 |
| SRR8612152 | LK48 | hexaploid | three leaf stage | root | Kenong9204 | sample_5_deficient_K_48h_root | China | 38.82 N 115.44 E | deficient-K treatment for 48h | LK_48 |
| SRR8612153 | LK6 | hexaploid | three leaf stage | root | Kenong9204 | sample_2_deficient_K_6h_root | China | 38.82 N 115.44 E | deficient-K treatment for 6h | LK_6 |
| SRR8612154 | CK | hexaploid | three leaf stage | root | Kenong9204 | sample_1_deficient_K_0h_root | China | 38.82 N 115.44 E | deficient-K treatment for 0h | CK |
| SRR8612155 | LK24 | hexaploid | three leaf stage | root | Kenong9204 | sample_4_deficient_K_24h_root | China | 38.82 N 115.44 E | deficient-K treatment for 24h | LK_24 |
| SRR8612156 | LK12 | hexaploid | three leaf stage | root | Kenong9204 | sample_3_deficient_K_12h_root | China | 38.82 N 115.44 E | deficient-K treatment for 12h | LK_12 |
| Run | Library Selection | Library Name | phenotype | Stage | Tissue | Cultivar | Sample Name | Geographic Location Name | Treatment | Replicate |
|---|---|---|---|---|---|---|---|---|---|---|
| SRR8432572 | RT-PCR | WSB_sRNA-2 | R | adult-plant stage | spikelets | Wangshuibai | WSB_sRNA-2 | China: Jiangsu | Fusarium head blight | WSB_small_RNA_library2 |
| SRR8432573 | RT-PCR | WSB_sRNA-1 | R | adult-plant stage | spikelets | Wangshuibai | WSB_sRNA-1 | China: Jiangsu | Fusarium head blight | WSB_small_RNA_library1 |
| SRR8432587 | RT-PCR | Sumai3_sRNA-2 | R | adult-plant stage | spikelets | Sumai_3 | Sumai3_sRNA-2 | China: Jiangsu | Fusarium head blight | Sumai3_small_RNA_library2 |
| SRR8432590 | RT-PCR | Sumai3_sRNA-1 | R | adult-plant stage | spikelets | Sumai_3 | Sumai3_sRNA-1 | China: Jiangsu | Fusarium head blight | Sumai3_small_RNA_library1 |
| Run | Library Selection | Library Name | Stage | Tissue | Cultivar | Sample Name | Geographic Location Name |
|---|---|---|---|---|---|---|---|
| SRR8374804 | cDNA | T3 | seedling stage | leaves | Xiaoyan 6 | Triticum aestivum-leaves | China:shannxi |
| SRR8374805 | cDNA | T2 | seedling stage | leaves | Xiaoyan 6 | Triticum aestivum-leaves | China:shannxi |
| SRR8374806 | cDNA | T1 | seedling stage | leaves | Xiaoyan 6 | Triticum aestivum-leaves | China:shannxi |
| Run | Library Selection | Library Name | Tissue | Cultivar | Sample Name | Geographic Location Name | Replicate |
|---|---|---|---|---|---|---|---|
| SRR7550252 | RANDOM | wheat_mock_14dpi_rep1 | Leaves | Drifter | wheat | Switzerland | rep1 |
| SRR7550253 | RANDOM | wheat_mock_12dpi_rep3 | Leaves | Drifter | wheat | Switzerland | rep3 |
| SRR7550254 | RANDOM | wheat_mock_14dpi_rep3 | Leaves | Drifter | wheat | Switzerland | rep3 |
| SRR7550255 | RANDOM | wheat_mock_14dpi_rep2 | Leaves | Drifter | wheat | Switzerland | rep2 |
| SRR7550256 | RANDOM | wheat_mock_7dpi_rep3 | Leaves | Drifter | wheat | Switzerland | rep3 |
| SRR7550257 | RANDOM | wheat_mock_7dpi_rep2 | Leaves | Drifter | wheat | Switzerland | rep2 |
| SRR7550258 | RANDOM | wheat_mock_12dpi_rep2 | Leaves | Drifter | wheat | Switzerland | rep2 |
| SRR7550259 | RANDOM | wheat_mock_12dpi_rep1 | Leaves | Drifter | wheat | Switzerland | rep1 |
| SRR7550270 | RANDOM | 3D7_14dpi_rep2 | Leaves | Drifter | wheat | Switzerland | rep2 |
| SRR7550271 | RANDOM | 3D7_14dpi_rep1 | Leaves | Drifter | wheat | Switzerland | rep1 |
| SRR7550272 | RANDOM | 3D7_12dpi_rep3 | Leaves | Drifter | wheat | Switzerland | rep3 |
| SRR7550273 | RANDOM | 3D7_12dpi_rep2 | Leaves | Drifter | wheat | Switzerland | rep2 |
| SRR7550274 | RANDOM | 3D7_12dpi_rep1 | Leaves | Drifter | wheat | Switzerland | rep1 |
| SRR7550275 | RANDOM | 3D7_7dpi_rep3 | Leaves | Drifter | wheat | Switzerland | rep3 |
| SRR7550276 | RANDOM | 3D7_7dpi_rep2 | Leaves | Drifter | wheat | Switzerland | rep2 |
| SRR7550277 | RANDOM | 3D7_7dpi_rep1 | Leaves | Drifter | wheat | Switzerland | rep1 |
| SRR7550278 | RANDOM | wheat_mock_7dpi_rep1 | Leaves | Drifter | wheat | Switzerland | rep1 |
| SRR7550279 | RANDOM | 3D7_14dpi_rep3 | Leaves | Drifter | wheat | Switzerland | rep3 |
| Run | Library Selection | Biome | Sample Name | Geographic Location Name | Environment |
|---|---|---|---|---|---|
| ERR2235370 | RANDOM | rachis | SAMEA104455176 | Canada | greenhouse |
| ERR2235369 | RANDOM | rachis | SAMEA104455175 | Canada | greenhouse |
| ERR2235368 | RANDOM | rachis | SAMEA104455174 | Canada | greenhouse |
| ERR2235367 | RANDOM | rachis | SAMEA104455173 | Canada | greenhouse |
| ERR2235366 | RANDOM | rachis | SAMEA104455172 | Canada | greenhouse |
| ERR2235365 | RANDOM | rachis | SAMEA104455171 | Canada | greenhouse |
| ERR2235364 | RANDOM | spikelet | SAMEA104455170 | Canada | greenhouse |
| ERR2235363 | RANDOM | spikelet | SAMEA104455169 | Canada | greenhouse |
| ERR2235362 | RANDOM | spikelet | SAMEA104455168 | Canada | greenhouse |
| ERR2235361 | RANDOM | spikelet | SAMEA104455167 | Canada | greenhouse |
| ERR2235360 | RANDOM | spikelet | SAMEA104455166 | Canada | greenhouse |
| ERR2235359 | RANDOM | spikelet | SAMEA104455165 | Canada | greenhouse |
| ERR2235358 | RANDOM | rachis | SAMEA104455164 | Canada | greenhouse |
| ERR2235357 | RANDOM | rachis | SAMEA104455163 | Canada | greenhouse |
| ERR2235356 | RANDOM | rachis | SAMEA104455162 | Canada | greenhouse |
| ERR2235355 | RANDOM | rachis | SAMEA104455161 | Canada | greenhouse |
| ERR2235354 | RANDOM | rachis | SAMEA104455160 | Canada | greenhouse |
| ERR2235353 | RANDOM | rachis | SAMEA104455159 | Canada | greenhouse |
| ERR2235352 | RANDOM | spikelet | SAMEA104455158 | Canada | greenhouse |
| ERR2235351 | RANDOM | spikelet | SAMEA104455157 | Canada | greenhouse |
| ERR2235350 | RANDOM | spikelet | SAMEA104455156 | Canada | greenhouse |
| ERR2235349 | RANDOM | spikelet | SAMEA104455155 | Canada | greenhouse |
| ERR2235348 | RANDOM | spikelet | SAMEA104455154 | Canada | greenhouse |
| ERR2235347 | RANDOM | spikelet | SAMEA104455153 | Canada | greenhouse |
| Run | Library Selection | Library Name | Stage | Tissue | Cultivar | Sample Name | Geographic Location Name | Treatment |
|---|---|---|---|---|---|---|---|---|
| SRR6328644 | RT-PCR | SR4A | three leaves stage | root | SR4 | sRNAseq_9 | China:shandong | pH8.9 |
| SRR6328645 | RT-PCR | JNA | three leaves stage | root | JN177 | sRNAseq_3 | China:shandong | pH8.9 |
| SRR6328646 | RT-PCR | SR3C | three leaves stage | root | SR3 | sRNAseq_4 | China:shandong | control |
| SRR6328647 | RT-PCR | JNC | three leaves stage | root | JN177 | sRNAseq_1 | China:shandong | control |
| SRR6328648 | RT-PCR | JNS | three leaves stage | root | JN177 | sRNAseq_2 | China:shandong | 200mM NaCl |
| SRR6328649 | RT-PCR | SR4C | three leaves stage | root | SR4 | sRNAseq_7 | China:shandong | control |
| SRR6328650 | RT-PCR | SR4S | three leaves stage | root | SR4 | sRNAseq_8 | China:shandong | 200mM NaCl |
| SRR6328651 | RT-PCR | SR3S | three leaves stage | root | SR3 | sRNAseq_5 | China:shandong | 200mM NaCl |
| SRR6328652 | RT-PCR | SR3A | three leaves stage | root | SR3 | sRNAseq_6 | China:shandong | pH8.9 |
| Run | Library Selection | Library Name | Stage | Tissue | Cultivar | Sample Name | Replicate |
|---|---|---|---|---|---|---|---|
| SRR5944333 | size fractionation | WT-sRNA-1HAI-rep1 | 1-12 HAI | germinating seed | Jimai5265 | WT_JM | rep1 |
| SRR5944334 | size fractionation | WT-sRNA-1HAI-rep2 | 1-12 HAI | germinating seed | Jimai5265 | WT_JM | rep2 |
| SRR5944335 | size fractionation | WT-sRNA-6HAI-rep1 | 1-12 HAI | germinating seed | Jimai5265 | WT_JM | rep1 |
| SRR5944336 | size fractionation | WT-sRNA-6HAI-rep2 | 1-12 HAI | germinating seed | Jimai5265 | WT_JM | rep2 |
| SRR5944337 | size fractionation | WT-sRNA-12HAI-rep1 | 1-12 HAI | germinating seed | Jimai5265 | WT_JM | rep1 |
| SRR5944338 | size fractionation | WT-sRNA-12HAI-rep2 | 1-12 HAI | germinating seed | Jimai5265 | WT_JM | rep2 |
| Run | Library Selection | Stage | Tissue | Sample Name | Geographic Location Name | Treatment |
|---|---|---|---|---|---|---|
| SRR5816454 | RANDOM | 24h | root | wr_173 | China:Beijing | Ca2+-channel blocker |
| Run | Library Selection | Stage | Tissue | Cultivar | Sample Name | Geographic Location Name | Replicate |
|---|---|---|---|---|---|---|---|
| SRR5461177 | cDNA | TS | Spike | Chinese Spring | TS-2 | China | biological replicate 2 |
| SRR5461176 | cDNA | TS | Spike | Chinese Spring | TS-1 | China | biological replicate 1 |
| SRR5460972 | cDNA | AM | Spike | Chinese Spring | AM-2 | China | biological replicate 2 |
| SRR5460967 | cDNA | AM | Spike | Chinese Spring | AM-1 | China | biological replicate 1 |
| SRR5460949 | cDNA | FM | Spike | Chinese Spring | FM-2 | China | biological replicate 2 |
| SRR5460941 | cDNA | FM | Spike | Chinese Spring | FM-1 | China | biological replicate 1 |
| SRR5460939 | cDNA | DR | Spike | Chinese Spring | DR-2 | China | biological replicate 2 |
| SRR5460930 | cDNA | DR | Spike | Chinese Spring | DR-1 | China | biological replicate 1 |
| Run | Library Name | Stage | Tissue | Cultivar | Sample Name | Geographic Location Name |
|---|---|---|---|---|---|---|
| SRR5381543 | CSA | anther | anther | Chinese Spring | Triticum aestivum L. Chinese Spring (CS) | China |
| SRR5381542 | CS-3CA | anther | anther | Chinese Spring | Chinese Spring-gametocidal 3C chromosome monosomic addition line (CS-3C) | China |
| Run | Library Selection | Library Name | Age | Tissue | Cultivar | Sample Name | Geographic Location Name | Treatment | Replicate |
|---|---|---|---|---|---|---|---|---|---|
| SRR5270350 | size fractionation | 12dpi_C_R1 | 17 days | First expanded leaf | ProINTA Federal | 12dpi_C_R1 | Argentina: Cordoba | Control 12 dpi Replicate 1 | Replicate 1 |
| SRR5270349 | size fractionation | 12dpi_C_R2 | 17 days | First expanded leaf | ProINTA Federal | 12dpi_C_R2 | Argentina: Cordoba | Control 12 dpi Replicate 2 | Replicate 2 |
| SRR5270348 | size fractionation | 12dpi_T_R1 | 17 days | First expanded leaf | ProINTA Federal | 12dpi_T_R1 | Argentina: Cordoba | Infected 12 dpi Replicate 1 | Replicate 1 |
| SRR5270347 | size fractionation | 12dpi_T_R2 | 17 days | First expanded leaf | ProINTA Federal | 12dpi_T_R2 | Argentina: Cordoba | Infected 12 dpi Replicate 2 | Replicate 2 |
| SRR5270346 | size fractionation | 21dpi_C_R1 | 26 days | First expanded leaf | ProINTA Federal | 21dpi_C_R1 | Argentina: Cordoba | Control 21 dpi Replicate 1 | Replicate 1 |
| SRR5270345 | size fractionation | 21dpi_C_R2 | 26 days | First expanded leaf | ProINTA Federal | 21dpi_C_R2 | Argentina: Cordoba | Control 21 dpi Replicate 2 | Replicate 2 |
| SRR5270344 | size fractionation | 21dpi_T_R1 | 26 days | First expanded leaf | ProINTA Federal | 21dpi_T_R1 | Argentina: Cordoba | Infected 21 dpi Replicate 1 | Replicate 1 |
| SRR5270343 | size fractionation | 21dpi_T_R2 | 26 days | First expanded leaf | ProINTA Federal | 21dpi_T_R2 | Argentina: Cordoba | Infected 21 dpi Replicate 2 | Replicate 2 |
| Run | Library Selection | Library Name | Age | Tissue | Cultivar | Sample Name | Geographic Location Name | Replicate |
|---|---|---|---|---|---|---|---|---|
| SRR5096892 | size fractionation | sRNA_DDAA1 | 30 days | Leaf 30D | TQ27 X TMU38 | sRNA_DDAA1 | China:Beijing | rep1 |
| SRR5096890 | size fractionation | sRNA_DDAA2 | 30 days | Leaf 31D | TQ27 X TMU38 | sRNA_DDAA2 | China:Beijing | rep2 |
| SRR5096872 | size fractionation | sRNA_AADD1 | 30 days | Leaf 32D | TMU38 X TQ27 | sRNA_AADD1 | China:Beijing | rep1 |
| SRR5096869 | size fractionation | sRNA_AADD2 | 30 days | Leaf 33D | TMU38 X TQ27 | sRNA_AADD2 | China:Beijing | rep2 |
| SRR5096896 | size fractionation | sRNA_AA2 | 30 days | Leaf 30D | TMU38 | sRNA_AA2 | China:Beijing | - |
| SRR5096879 | size fractionation | sRNA_AA1 | 30 days | Leaf 30D | TMU38 | sRNA_AA1 | China:Beijing | - |
| SRR5096877 | size fractionation | sRNA_DD1 | 30 days | Leaf 30D | TQ27 | sRNA_DD1 | China:Beijing | - |
| SRR5096871 | size fractionation | sRNA_DD2 | 30 days | Leaf 30D | TQ27 | sRNA_DD2 | China:Beijing | - |
| Run | Library Selection | Library Name | Stage | Tissue | Cultivar | Sample Name | Geographic Location Name | Replicate |
|---|---|---|---|---|---|---|---|---|
| SRR4417233 | size fractionation | L21A | Mature seed | Seed | L21 | L21 | China | rep1 |
| SRR4417232 | size fractionation | J22C | Mature seed | Seed | J22 | J22 | China | rep3 |
| SRR4417231 | size fractionation | J22B | Mature seed | Seed | J22 | J22 | China | rep2 |
| SRR4417230 | size fractionation | J22A | Mature seed | Seed | J22 | J22 | China | rep1 |
| SRR4417229 | size fractionation | J19C | Mature seed | Seed | J19 | J19 | China | rep3 |
| SRR4417228 | size fractionation | J19B | Mature seed | Seed | J19 | J19 | China | rep2 |
| SRR4417227 | size fractionation | J19A | Mature seed | Seed | J19 | J19 | China | rep1 |
| SRR4417226 | size fractionation | T349C | Mature seed | Seed | T349 | T349 | China | rep3 |
| SRR4417225 | size fractionation | L21C | Mature seed | Seed | L21 | L21 | China | rep3 |
| SRR4417224 | size fractionation | L21B | Mature seed | Seed | L21 | L21 | China | rep2 |
| SRR4417223 | size fractionation | T349B | Mature seed | Seed | T349 | T349 | China | rep2 |
| SRR4417222 | size fractionation | T349A | Mature seed | Seed | T349 | T349 | China | rep1 |
| Run | Library Selection | Library Name | genotype | Stage | Tissue | Phenotype | Sample Name | Geographic Location Name | Replicate |
|---|---|---|---|---|---|---|---|---|---|
| SRR4114480 | RANDOM | 7294_sRNASeq | 7294 | booting | Leaf sheath | glaucous | 7294_sRNASeq | Canada: Saskatchewan | - |
| SRR4114479 | RANDOM | 7293_sRNASeq | 7293 | booting | Leaf sheath | glaucous | 7293_sRNASeq | Canada: Saskatchewan | - |
| SRR4114478 | RANDOM | 7290_sRNASeq | 7290 | booting | Leaf sheath | glaucous | 7290_sRNASeq | Canada: Saskatchewan | - |
| SRR4114477 | RANDOM | 7289_sRNASeq | 7289 | booting | Leaf sheath | glaucous | 7289_sRNASeq | Canada: Saskatchewan | - |
| SRR4114476 | RANDOM | 7287_sRNASeq | 7287 | booting | Leaf sheath | non-glaucous | 7287_sRNASeq | Canada: Saskatchewan | - |
| SRR4114475 | RANDOM | 7285_sRNASeq | 7285 | booting | Leaf sheath | non-glaucous | 7285_sRNASeq | Canada: Saskatchewan | - |
| SRR4114473 | RANDOM | 7282_sRNASeq | 7282 | booting | Leaf sheath | non-glaucous | 7282_sRNASeq | Canada: Saskatchewan | - |
| SRR4114472 | RANDOM | 7281_sRNASeq | 7281 | booting | Leaf sheath | non-glaucous | 7281_sRNASeq | Canada: Saskatchewan | - |
| SRR4114471 | RANDOM | 7279_sRNASeq | 7279 | booting | Leaf sheath | non-glaucous | 7279_sRNASeq | Canada: Saskatchewan | - |
| SRR4114460 | RANDOM | D051N-2_sRNASeq | D051N | booting | Leaf sheath | non-glaucous | D051N-2_sRNASeq | Canada: Saskatchewan | rep2 |
| SRR4114459 | RANDOM | D051N-1_sRNASeq | D051N | booting | Leaf sheath | non-glaucous | D051N-1_sRNASeq | Canada: Saskatchewan | rep1 |
| SRR4114458 | RANDOM | D051-2_sRNASeq | D051 | booting | Leaf sheath | glaucous | D051-2_sRNASeq | Canada: Saskatchewan | rep2 |
| SRR4114457 | RANDOM | D051-1_sRNASeq | D051 | booting | Leaf sheath | glaucous | D051-1_sRNASeq | Canada: Saskatchewan | rep1 |
| SRR4114456 | RANDOM | AG2N-4_sRNASeq | AG2N | booting | Leaf sheath | non-glaucous | AG2N-4_sRNASeq | Canada: Saskatchewan | rep4 |
| SRR4114455 | RANDOM | AG2N-3_sRNASeq | AG2N | booting | Leaf sheath | non-glaucous | AG2N-3_sRNASeq | Canada: Saskatchewan | rep3 |
| SRR4114454 | RANDOM | AG2N-2_sRNASeq | AG2N | booting | Leaf sheath | non-glaucous | AG2N-2_sRNASeq | Canada: Saskatchewan | rep2 |
| SRR4114453 | RANDOM | AG2N-1_sRNASeq | AG2N | booting | Leaf sheath | non-glaucous | AG2N-1_sRNASeq | Canada: Saskatchewan | rep1 |
| SRR4114451 | RANDOM | AG2F1-2_sRNASeq | AG2F1 | booting | Leaf sheath | non-glaucous | AG2F1-2_sRNASeq | Canada: Saskatchewan | rep2 |
| SRR4114450 | RANDOM | AG2F1-1_sRNASeq | AG2F1 | booting | Leaf sheath | non-glaucous | AG2F1-1_sRNASeq | Canada: Saskatchewan | rep1 |
| SRR4114449 | RANDOM | AG2-4_sRNASeq | AG2 | booting | Leaf sheath | glaucous | AG2-4_sRNASeq | Canada: Saskatchewan | rep4 |
| SRR4114448 | RANDOM | AG2-3_sRNASeq | AG2 | booting | Leaf sheath | glaucous | AG2-3_sRNASeq | Canada: Saskatchewan | rep3 |
| SRR4114447 | RANDOM | AG2-2_sRNASeq | AG2 | booting | Leaf sheath | glaucous | AG2-2_sRNASeq | Canada: Saskatchewan | rep2 |
| SRR4114446 | RANDOM | AG2-2_F1C_sRNASeq | AG2_F1C | booting | Leaf sheath | glaucous | AG2-2_F1C_sRNASeq | Canada: Saskatchewan | rep2 |
| SRR4114445 | RANDOM | AG2-1_sRNASeq | AG2 | booting | Leaf sheath | glaucous | AG2-1_sRNASeq | Canada: Saskatchewan | rep1 |
| SRR4114444 | RANDOM | AG2-1_F1C_sRNASeq | AG2_F1C | booting | Leaf sheath | glaucous | AG2-1_F1C_sRNASeq | Canada: Saskatchewan | rep1 |
| SRR4114443 | RANDOM | AG1N-2_sRNASeq | AG1N | booting | Leaf sheath | non-glaucous | AG1N-2_sRNASeq | Canada: Saskatchewan | rep2 |
| SRR4114442 | RANDOM | AG1N-1_sRNASeq | AG1N | booting | Leaf sheath | non-glaucous | AG1N-1_sRNASeq | Canada: Saskatchewan | rep1 |
| SRR4114440 | RANDOM | AG1F1-2_sRNASeq | AG1F1 | booting | Leaf sheath | non-glaucous | AG1F1-2_sRNASeq | Canada: Saskatchewan | rep2 |
| SRR4114439 | RANDOM | AG1F1-1_sRNASeq | AG1F1 | booting | Leaf sheath | non-glaucous | AG1F1-1_sRNASeq | Canada: Saskatchewan | rep1 |
| SRR4114438 | RANDOM | AG1-2_sRNASeq | AG1 | booting | Leaf sheath | glaucous | AG1-2_sRNASeq | Canada: Saskatchewan | rep2 |
| SRR4114437 | RANDOM | AG1-1_sRNASeq | AG1 | booting | Leaf sheath | glaucous | AG1-1_sRNASeq | Canada: Saskatchewan | rep1 |
| SRR4114436 | RANDOM | AE3N-2_sRNASeq | AE3N | booting | Leaf sheath | non-glaucous | AE3N-2_sRNASeq | Canada: Saskatchewan | rep2 |
| SRR4114435 | RANDOM | AE3N-1_sRNASeq | AE3N | booting | Leaf sheath | non-glaucous | AE3N-1_sRNASeq | Canada: Saskatchewan | rep1 |
| SRR4114434 | RANDOM | AE3F1-2_sRNASeq | AE3F1 | booting | Leaf sheath | non-glaucous | AE3F1-2_sRNASeq | Canada: Saskatchewan | rep2 |
| SRR4114433 | RANDOM | AE3F1-1_sRNASeq | AE3F1 | booting | Leaf sheath | non-glaucous | AE3F1-1_sRNASeq | Canada: Saskatchewan | rep1 |
| SRR4114432 | RANDOM | AE3-2_sRNASeq | AE3 | booting | Leaf sheath | glaucous | AE3-2_sRNASeq | Canada: Saskatchewan | rep2 |
| SRR4114431 | RANDOM | AE3-1_sRNASeq | AE3 | booting | Leaf sheath | glaucous | AE3-1_sRNASeq | Canada: Saskatchewan | rep1 |
| Run | Library Selection | SAMPLING_TIME | Cultivar | Sample Name | Treatment | Replicate |
|---|---|---|---|---|---|---|
| SRR3721412 | size fractionation | 10 day after treatment (DAT) | Glenlea | GSM2214310 | UV | Rep3 |
| SRR3721411 | size fractionation | 10 day after treatment (DAT) | Glenlea | GSM2214309 | Light | Rep3 |
| SRR3721410 | size fractionation | 10 day after treatment (DAT) | Glenlea | GSM2214308 | Heat | Rep3 |
| SRR3721409 | size fractionation | 10 day after treatment (DAT) | Glenlea | GSM2214307 | Control | Rep3 |
| SRR3721408 | size fractionation | 10 day after treatment (DAT) | Glenlea | GSM2214306 | UV | Rep2 |
| SRR3721407 | size fractionation | 10 day after treatment (DAT) | Glenlea | GSM2214305 | Light | Rep2 |
| SRR3721406 | size fractionation | 10 day after treatment (DAT) | Glenlea | GSM2214304 | Heat | Rep2 |
| SRR3721405 | size fractionation | 10 day after treatment (DAT) | Glenlea | GSM2214303 | Control | Rep2 |
| SRR3721404 | size fractionation | 10 day after treatment (DAT) | Glenlea | GSM2214302 | UV | Rep1 |
| SRR3721403 | size fractionation | 10 day after treatment (DAT) | Glenlea | GSM2214301 | Light | Rep1 |
| SRR3721402 | size fractionation | 10 day after treatment (DAT) | Glenlea | GSM2214300 | Heat | Rep1 |
| SRR3721401 | size fractionation | 10 day after treatment (DAT) | Glenlea | GSM2214299 | Control | Rep1 |
| SRR3721400 | size fractionation | 7 day after treatment (DAT) | Glenlea | GSM2214298 | UV | Rep3 |
| SRR3721399 | size fractionation | 7 day after treatment (DAT) | Glenlea | GSM2214297 | Light | Rep3 |
| SRR3721398 | size fractionation | 7 day after treatment (DAT) | Glenlea | GSM2214296 | Heat | Rep3 |
| SRR3721397 | size fractionation | 7 day after treatment (DAT) | Glenlea | GSM2214295 | Control | Rep3 |
| SRR3721396 | size fractionation | 7 day after treatment (DAT) | Glenlea | GSM2214294 | UV | Rep2 |
| SRR3721395 | size fractionation | 7 day after treatment (DAT) | Glenlea | GSM2214293 | Light | Rep2 |
| SRR3721394 | size fractionation | 7 day after treatment (DAT) | Glenlea | GSM2214292 | Heat | Rep2 |
| SRR3721393 | size fractionation | 7 day after treatment (DAT) | Glenlea | GSM2214291 | Control | Rep2 |
| SRR3721392 | size fractionation | 7 day after treatment (DAT) | Glenlea | GSM2214290 | UV | Rep1 |
| SRR3721391 | size fractionation | 7 day after treatment (DAT) | Glenlea | GSM2214289 | Light | Rep1 |
| SRR3721390 | size fractionation | 7 day after treatment (DAT) | Glenlea | GSM2214288 | Heat | Rep1 |
| SRR3721389 | size fractionation | 7 day after treatment (DAT) | Glenlea | GSM2214287 | Control | Rep1 |
| SRR3721388 | size fractionation | 3 day after treatment (DAT) | Glenlea | GSM2214286 | UV | Rep3 |
| SRR3721387 | size fractionation | 3 day after treatment (DAT) | Glenlea | GSM2214285 | Light | Rep3 |
| SRR3721386 | size fractionation | 3 day after treatment (DAT) | Glenlea | GSM2214284 | Heat | Rep3 |
| SRR3721385 | size fractionation | 3 day after treatment (DAT) | Glenlea | GSM2214283 | Control | Rep3 |
| SRR3721384 | size fractionation | 3 day after treatment (DAT) | Glenlea | GSM2214282 | UV | Rep2 |
| SRR3721383 | size fractionation | 3 day after treatment (DAT) | Glenlea | GSM2214281 | Light | Rep2 |
| SRR3721382 | size fractionation | 3 day after treatment (DAT) | Glenlea | GSM2214280 | Heat | Rep2 |
| SRR3721381 | size fractionation | 3 day after treatment (DAT) | Glenlea | GSM2214279 | Control | Rep2 |
| SRR3721380 | size fractionation | 3 day after treatment (DAT) | Glenlea | GSM2214278 | UV | Rep1 |
| SRR3721379 | size fractionation | 3 day after treatment (DAT) | Glenlea | GSM2214277 | Light | Rep1 |
| SRR3721378 | size fractionation | 3 day after treatment (DAT) | Glenlea | GSM2214276 | Heat | Rep1 |
| SRR3721377 | size fractionation | 3 day after treatment (DAT) | Glenlea | GSM2214275 | Control | Rep1 |
| SRR3721376 | size fractionation | 2 day after treatment (DAT) | Glenlea | GSM2214274 | UV | Rep3 |
| SRR3721375 | size fractionation | 2 day after treatment (DAT) | Glenlea | GSM2214273 | Light | Rep3 |
| SRR3721374 | size fractionation | 2 day after treatment (DAT) | Glenlea | GSM2214272 | Heat | Rep3 |
| SRR3721373 | size fractionation | 2 day after treatment (DAT) | Glenlea | GSM2214271 | Control | Rep3 |
| SRR3721372 | size fractionation | 2 day after treatment (DAT) | Glenlea | GSM2214270 | UV | Rep2 |
| SRR3721371 | size fractionation | 2 day after treatment (DAT) | Glenlea | GSM2214269 | Light | Rep2 |
| SRR3721370 | size fractionation | 2 day after treatment (DAT) | Glenlea | GSM2214268 | Heat | Rep2 |
| SRR3721369 | size fractionation | 2 day after treatment (DAT) | Glenlea | GSM2214267 | Control | Rep2 |
| SRR3721368 | size fractionation | 2 day after treatment (DAT) | Glenlea | GSM2214266 | UV | Rep1 |
| SRR3721367 | size fractionation | 2 day after treatment (DAT) | Glenlea | GSM2214265 | Light | Rep1 |
| SRR3721366 | size fractionation | 2 day after treatment (DAT) | Glenlea | GSM2214264 | Heat | Rep1 |
| SRR3721365 | size fractionation | 2 day after treatment (DAT) | Glenlea | GSM2214263 | Control | Rep1 |
| SRR3721364 | size fractionation | 1 day after treatment (DAT) | Glenlea | GSM2214262 | UV | Rep3 |
| SRR3721363 | size fractionation | 1 day after treatment (DAT) | Glenlea | GSM2214261 | Light | Rep3 |
| SRR3721362 | size fractionation | 1 day after treatment (DAT) | Glenlea | GSM2214260 | Heat | Rep3 |
| SRR3721361 | size fractionation | 1 day after treatment (DAT) | Glenlea | GSM2214259 | Control | Rep3 |
| SRR3721360 | size fractionation | 1 day after treatment (DAT) | Glenlea | GSM2214258 | UV | Rep2 |
| SRR3721359 | size fractionation | 1 day after treatment (DAT) | Glenlea | GSM2214257 | Light | Rep2 |
| SRR3721358 | size fractionation | 1 day after treatment (DAT) | Glenlea | GSM2214256 | Heat | Rep2 |
| SRR3721357 | size fractionation | 1 day after treatment (DAT) | Glenlea | GSM2214255 | Control | Rep2 |
| SRR3721356 | size fractionation | 1 day after treatment (DAT) | Glenlea | GSM2214254 | UV | Rep1 |
| SRR3721355 | size fractionation | 1 day after treatment (DAT) | Glenlea | GSM2214253 | Light | Rep1 |
| SRR3721354 | size fractionation | 1 day after treatment (DAT) | Glenlea | GSM2214252 | Heat | Rep1 |
| SRR3721353 | size fractionation | 1 day after treatment (DAT) | Glenlea | GSM2214251 | Control | Rep1 |
| SRR3721352 | size fractionation | 0 day after treatment (DAT) | Glenlea | GSM2214250 | UV | Rep3 |
| SRR3721351 | size fractionation | 0 day after treatment (DAT) | Glenlea | GSM2214249 | Light | Rep3 |
| SRR3721350 | size fractionation | 0 day after treatment (DAT) | Glenlea | GSM2214248 | Heat | Rep3 |
| SRR3721349 | size fractionation | 0 day after treatment (DAT) | Glenlea | GSM2214247 | Control | Rep3 |
| SRR3721348 | size fractionation | 0 day after treatment (DAT) | Glenlea | GSM2214246 | UV | Rep2 |
| SRR3721347 | size fractionation | 0 day after treatment (DAT) | Glenlea | GSM2214245 | Light | Rep2 |
| SRR3721346 | size fractionation | 0 day after treatment (DAT) | Glenlea | GSM2214244 | Heat | Rep2 |
| SRR3721345 | size fractionation | 0 day after treatment (DAT) | Glenlea | GSM2214243 | Control | Rep2 |
| SRR3721344 | size fractionation | 0 day after treatment (DAT) | Glenlea | GSM2214242 | UV | Rep1 |
| SRR3721343 | size fractionation | 0 day after treatment (DAT) | Glenlea | GSM2214241 | Light | Rep1 |
| SRR3721342 | size fractionation | 0 day after treatment (DAT) | Glenlea | GSM2214240 | Heat | Rep1 |
| SRR3721341 | size fractionation | 0 day after treatment (DAT) | Glenlea | GSM2214239 | Control | Rep1 |
| Run | Library Selection | Stage | Tissue | Cultivar | Sample Name | Geographic Location Name |
|---|---|---|---|---|---|---|
| SRR3144539 | size fractionation | after 15 days culture derived from immature embryo | callus | Zhoumai18 | IME15 sRNA library | China: Henan Agricultural University, Zhengzhou |
| SRR3144538 | size fractionation | after 6 days culture derived from immature embryo | callus | Zhoumai18 | IME6 sRNA library | China: Henan Agricultural University, Zhengzhou |
| SRR3144523 | size fractionation | after 3 days culture derived from immature embryo | callus | Zhoumai18 | IME3 sRNA library | China: Henan Agricultural University, Zhengzhou |
| SRR3144511 | size fractionation | after 6 days culture dereved from mature embryo | callus | Zhoumai 18 | ME6 sRNA library | China: Henan Agricultural University, Zhengzhou |
| SRR3140978 | size fractionation | after15 days culture derived from mature embryo | wheat callus | Zhoumai 18 | ME15 sRNA library | China: Henan Agricultural University, Zhengzhou |
| SRR3140846 | size fractionation | after 3 days culture dereved from mature embryo | callus | Zhoumai 18 | ME3 sRNA library | China: Henan Agricultural University, Zhengzhou |
| Experiment Accession | Run | Library Selection | Age | Tissue | Cultivar | Sample Name | Geographic Location Name |
|---|---|---|---|---|---|---|---|
| SRX1548275 | SRR3151453 SRR3151454 | size fractionation | 30 days | grain | Spelta | I_Spelta_30D | Hungary |
| SRX1548274 | SRR3151451 SRR3151452 | size fractionation | 20 days | grain | Spelta | I_Spelta_20D | Hungary |
| SRX1548273 | SRR3151449 SRR3151450 | size fractionation | 10 days | grain | Spelta | I_Spelta_10D | Hungary |
| SRX1548272 | SRR3151447 SRR3151448 | size fractionation | 30 days | grain | Bankuti lines B52 | I_B52_30D | Hungary |
| SRX1548271 | SRR3151445 SRR3151446 | size fractionation | 20 days | grain | Bankuti lines B52 | I_B52_20D | Hungary |
| SRX1548269 | SRR3151443 SRR3151444 | size fractionation | 10 days | grain | Bankuti lines B52 | I_B52_10D | Hungary |
| SRX1548268 | SRR3151441 SRR3151442 | size fractionation | 30 days | grain | Bankuti lines B35 | I_B35_30D | Hungary |
| SRX1548266 | SRR3151439 SRR3151440 | size fractionation | 20 days | grain | Bankuti lines B35 | I_B35_20D | Hungary |
| SRX1548265 | SRR3151437 SRR3151438 | size fractionation | 10 days | grain | Bankuti lines B35 | I_B35_10D | Hungary |
| SRX1548199 | SRR3151435 SRR3151436 | RANDOM | 30 days | grain | Spelta | T_Spelta_30D | Hungary |
| SRX1548198 | SRR3151433 SRR3151434 | RANDOM | 20 days | grain | Spelta | T_Spelta_20D | Hungary |
| SRX1548192 | SRR3151431 SRR3151432 | RANDOM | 10 days | grain | Spelta | T_Spelta_10D | Hungary |
| SRX1548177 | SRR3151429 SRR3151430 | RANDOM | 30 days | grain | Bankuti lines B52 | T_B52_30D | Hungary |
| SRX1548164 | SRR3151427 SRR3151428 | RANDOM | 20 days | grain | Bankuti lines B52 | T_B52_20D | Hungary |
| SRX1548163 | SRR3151425 SRR3151426 | RANDOM | 10 days | grain | Bankuti lines B52 | T_B52_10D | Hungary |
| SRX1548152 | SRR3144555 SRR3151424 | RANDOM | 30 days | grain | Bankuti lines B35 | T_B35_30D | Hungary |
| SRX1548148 | SRR3144553 SRR3144554 | RANDOM | 20 days | grain | Bankuti lines B35 | T_B35_20D | Hungary |
| SRX1546448 | SRR3144551 SRR3144552 | RANDOM | 10 days | grain | Bankuti lines B35 | T_B35_10D | Hungary |
| Run | Library Selection | Library Name | Stage | Tissue | Cultivar | Sample Name | Geographic Location Name | Treatment |
|---|---|---|---|---|---|---|---|---|
| SRR3136704 | RANDOM | SKS-S | seed germination | Shoot | HD-2967 | Shoot tissue | India | Nitrate stress |
| SRR2146991 | RANDOM | SKS-N | Seedling stage | Root | HD-2967 | Root tisue | India | Nitrate stress |
| SRR2146992 | RANDOM | SKS-S | Seedling stage | Root | HD-2967 | Root tisue | India | Nitrate stress |
| Run | Library Selection | Age/Stage | Tissue | Cultivar | Sample Name |
|---|---|---|---|---|---|
| SRR1796322 | size fractionation | 28 days post anthesis | grain | Chinese Spring | GSM1606477 |
| SRR1796321 | size fractionation | 21 days post anthesis | grain | Chinese Spring | GSM1606476 |
| SRR1796320 | size fractionation | 14 days post anthesis | grain | Chinese Spring | GSM1606475 |
| SRR1796319 | size fractionation | 7 days post anthesis | grain | Chinese Spring | GSM1606474 |
| Run | Library Selection | Stage | Tissue | Cultivar | Sample Name |
|---|---|---|---|---|---|
| SRR1728653 | size fractionation | two-leaf stage | leaf | Zhengyin1 | T2 sRNA library |
| SRR1728566 | size fractionation | two-leaf stage | leaf | Zhengyin1 | C2 sRNA library |
| SRR1727004 | size fractionation | two-leaf stage | leaf | Hanxuan10 | C1 |
| SRR1728309 | size fractionation | two-leaf stage | leaf | Hanxuan 10 | T1 sRNA library |
| Run | Library Selection | Library Name | Age | Tissue | Cultivar | Sample Name | Geographic Location Name |
|---|---|---|---|---|---|---|---|
| SRR1646809 | size fractionation | R-PImi_data.fastq | 10 days | leaf | HD2329+Lr24 | Small RNA Wheat HD2329+Lr24 infected with Puccinia triticina (R-PImi) | India |
| SRR1646808 | size fractionation | R-Mmi_data.fastq | 10 days | leaf | HD2329+Lr24 | Small RNA Wheat HD2329+Lr24 mock inoculated (R-Mmi) | India |
| SRR1646807 | size fractionation | S-PImi_data.fastq | 10 days | leaf | HD2329 | Small RNA Wheat HD2329 infected with Puccinia triticina (S-PImi) | India |
| SRR1646806 | size fractionation | Small RNA Wheat HD2329 mock inoculated (S-Mmi) | 10 days | leaf | HD2329 | Small RNA Wheat HD2329 mock inoculated (S-Mmi) | India |
| Experiment Accession | Run | Cultivar | Sample Name |
|---|---|---|---|
| SRX500281 | SRR1203861 SRR1203865 SRR1203916 SRR1203917 | wheat | Identification of Novel miRNAs and miRNA Expression Profiling in Wheat Hybrid Necrosis |
| Run | Library Selection | Tissue | Cultivar | Sample Name |
|---|---|---|---|---|
| SRR1196023 | size fractionation | flag leaves | Chinese Spring | FL |
| SRR1196045 | size fractionation | grain of 15 days after pollination | Chinese Spring | GRA15 |
| SRR1196029 | size fractionation | grain of 8 days after pollination | Chinese Spring | GRA8 |
| SRR1196022 | size fractionation | 10-15 mm young spikes | Chinese Spring | YS15 |
| SRR1195944 | size fractionation | 0-5 mm young spikes | Chinese Spring | YS5 |
| SRR1195282 | size fractionation | stems in the jointing stage | Chinese Spring | SJ |
| SRR1195281 | size fractionation | seedling root | Chinese Spring | SR |
| SRR1195280 | size fractionation | seedling leaf | Chinese Spring | seedling leaf |
| SRR1195279 | size fractionation | seedling shoot | Chinese Spring | SH |
| SRR1195025 | size fractionation | embryo of germinating seed embryos | Chinese Spring | GSE |
| SRR1195024 | size fractionation | grains | Chinese Spring | dry grains |
| Run | Library Name | Library Selection | Ecotype | Stage | Tissue | Sample Name | Geographic Location Name | Treatment |
|---|---|---|---|---|---|---|---|---|
| SRR22878362 | AGA-sRNA | PCR | GGAAxAA-F1 | three-leaf | seedling | Sample 1 | China | small RNA |
| SRR22878361 | AGD-sRNA | PCR | GGAAxDD-F1 | three-leaf | seedling | Sample 2 | China | small RNA |
| Run | Library Selection | Stage | Tissue | Cultivar | Sample Name | Geographic Location Name |
|---|---|---|---|---|---|---|
| SRR5460520 | RT-PCR | 6 days after pollination | endosperm | TMU06 | TMU06(AA)_endosperm_sRNA | China:Nanjing |
| SRR5460519 | RT-PCR | 6 days after pollination | endosperm | TMU06 | TMU06(AA)_endosperm_sRNA | China:Nanjing |
| SRR5460518 | RT-PCR | 6 days after pollination | endosperm | TMU06 | TMU06(AA)_endosperm_sRNA | China:Nanjing |
| SRR5460508 | RT-PCR | 6 days after pollination | endosperm | TMU38 | TMU38(AA)_endosperm_sRNA | China:Nanjing |
| SRR5460507 | RT-PCR | 6 days after pollination | endosperm | TMU38 | TMU38(AA)_endosperm_sRNA | China:Nanjing |
| SRR5460481 | RT-PCR | 6 days after pollination | endosperm | TMU38 | TMU38(AA)_endosperm_sRNA | China:Nanjing |
| SRR5460523 | RT-PCR | 6 days after pollination | endosperm | TL05 | TL05(SS)_endosperm_sRNA | China:Nanjing |
| SRR5460522 | RT-PCR | 6 days after pollination | endosperm | TL05 | TL05(SS)_endosperm_sRNA | China:Nanjing |
| SRR5460521 | RT-PCR | 6 days after pollination | endosperm | TL05 | TL05(SS)_endosperm_sRNA | China:Nanjing |
| SRR5460513 | RT-PCR | 6 days after pollination | endosperm | TQ27 | TQ27(DD)_endosperm_sRNA | China:Nanjing |
| SRR5460512 | RT-PCR | 6 days after pollination | endosperm | TQ27 | TQ27(DD)_endosperm_sRNA | China:Nanjing |
| SRR5460509 | RT-PCR | 6 days after pollination | endosperm | TQ27 | TQ27(DD)_endosperm_sRNA | China:Nanjing |
| SRR5460516 | RT-PCR | 6 days after pollination | endosperm | AT2 | AT2(AADD)_endosperm_sRNA | China:Nanjing |
| SRR5460517 | RT-PCR | 6 days after pollination | endosperm | AT2 | AT2(AADD)_endosperm_sRNA | China:Nanjing |
| SRR5460524 | RT-PCR | 6 days after pollination | endosperm | TLTU | TLTU(SSAA)_endosperm_sRNA | China:Nanjing |
| SRR5460526 | RT-PCR | 6 days after pollination | endosperm | TLTU | TLTU(SSAA)_endosperm_sRNA | China:Nanjing |
| SRR5460528 | RT-PCR | 6 days after pollination | endosperm | TLTU | TLTU(SSAA)_endosperm_sRNA | China:Nanjing |
| SRR5460515 | RT-PCR | 6 days after pollination | endosperm | AT2 | AT2(AADD)_endosperm_sRNA | China:Nanjing |
| Run | Library Name | Age | Tissue | Cultivar | Sample Name | Geographic Location Name | Replicate |
|---|---|---|---|---|---|---|---|
| SRR11881520 | Hvu-1.0-1_M_sRNA-seq | 1.0 mm anther | Anther | Morex | Hvu-1.0-1_M_sRNA-seq | USA: St. Louis | replicate 1 |
| SRR11881531 | Hvu-0.8-3_M_sRNA-seq | 0.8 mm anther | Anther | Morex | Hvu-0.8-3_M_sRNA-seq | USA: St. Louis | replicate 3 |
| SRR11881552 | Hvu-0.8-1_M_sRNA-seq | 0.8 mm anther | Anther | Morex | Hvu-0.8-1_M_sRNA-seq | USA: St. Louis | replicate 1 |
| SRR11881563 | Hvu-0.6-3_M_sRNA-seq | 0.6 mm anther | Anther | Morex | Hvu-0.6-3_M_sRNA-seq | USA: St. Louis | replicate 3 |
| SRR11881574 | Hvu-0.6-2_M_sRNA-seq | 0.6 mm anther | Anther | Morex | Hvu-0.6-2_M_sRNA-seq | USA: St. Louis | replicate 2 |
| SRR11881585 | Hvu-0.6-1_M_sRNA-seq | 0.6 mm anther | Anther | Morex | Hvu-0.6-1_M_sRNA-seq | USA: St. Louis | replicate 1 |
| SRR11881596 | Hvu-0.4-4_M_sRNA-seq | 0.4 mm anther | Anther | Morex | Hvu-0.4-4_M_sRNA-seq | USA: St. Louis | replicate 3 |
| SRR11881605 | Hvu-1.8-3_GP_sRNA-seq | 1.8 mm anther | Anther | Golden Promise | Hvu-1.8-3_GP_sRNA-seq | USA: St. Louis | replicate 3 |
| SRR11881606 | Hvu-1.8-2_GP_sRNA-seq | 1.8 mm anther | Anther | Golden Promise | Hvu-1.8-2_GP_sRNA-seq | USA: St. Louis | replicate 2 |
| SRR11881607 | Hvu-0.4-2_M_sRNA-seq | 0.4 mm anther | Anther | Morex | Hvu-0.4-2_M_sRNA-seq | USA: St. Louis | replicate 2 |
| SRR11881608 | Hvu-1.8-1_GP_sRNA-seq | 1.8 mm anther | Anther | Golden Promise | Hvu-1.8-1_GP_sRNA-seq | USA: St. Louis | replicate 1 |
| SRR11881609 | Hvu-1.4-3_GP_sRNA-seq | 1.4 mm anther | Anther | Golden Promise | Hvu-1.4-3_GP_sRNA-seq | USA: St. Louis | replicate 3 |
| SRR11881610 | Hvu-1.4-2_GP_sRNA-seq | 1.4 mm anther | Anther | Golden Promise | Hvu-1.4-2_GP_sRNA-seq | USA: St. Louis | replicate 2 |
| SRR11881611 | Hvu-1.4-1_GP_sRNA-seq | 1.4 mm anther | Anther | Golden Promise | Hvu-1.4-1_GP_sRNA-seq | USA: St. Louis | replicate 1 |
| SRR11881612 | Hvu-1.0-4_GP_sRNA-seq | 1.0 mm anther | Anther | Golden Promise | Hvu-1.0-4_GP_sRNA-seq | USA: St. Louis | replicate 3 |
| SRR11881613 | Hvu-0.8-2_M_sRNA-seq | 0.8 mm anther | Anther | Morex | Hvu-0.8-2_M_sRNA-seq | USA: St. Louis | replicate 2 |
| SRR11881614 | Hvu-0.2-2_M_sRNA-seq | 0.2 mm anther | Anther | Morex | Hvu-0.2-2_M_sRNA-seq | USA: St. Louis | replicate 2 |
| SRR11881615 | Hvu-0.2-1_M_sRNA-seq | 0.2 mm anther | Anther | Morex | Hvu-0.2-1_M_sRNA-seq | USA: St. Louis | replicate 1 |
| SRR11881616 | Hvu-1.0-2_GP_sRNA-seq | 1.0 mm anther | Anther | Golden Promise | Hvu-1.0-2_GP_sRNA-seq | USA: St. Louis | replicate 2 |
| SRR11881617 | Hvu-1.0-1_GP_sRNA-seq | 1.0 mm anther | Anther | Golden Promise | Hvu-1.0-1_GP_sRNA-seq | USA: St. Louis | replicate 1 |
| SRR11881618 | Hvu-0.8-3_GP_sRNA-seq | 0.8 mm anther | Anther | Golden Promise | Hvu-0.8-3_GP_sRNA-seq | USA: St. Louis | replicate 3 |
| SRR11881619 | Hvu-0.8-2_GP_sRNA-seq | 0.8 mm anther | Anther | Golden Promise | Hvu-0.8-2_GP_sRNA-seq | USA: St. Louis | replicate 2 |
| SRR11881620 | Hvu-0.8-1_GP_sRNA-seq | 0.8 mm anther | Anther | Golden Promise | Hvu-0.8-1_GP_sRNA-seq | USA: St. Louis | replicate 1 |
| SRR11881621 | Hvu-0.4-1_M_sRNA-seq | 0.4 mm anther | Anther | Morex | Hvu-0.4-1_M_sRNA-seq | USA: St. Louis | replicate 1 |
| SRR11881622 | Hvu-0.6-3_GP_sRNA-seq | 0.6 mm anther | Anther | Golden Promise | Hvu-0.6-3_GP_sRNA-seq | USA: St. Louis | replicate 3 |
| SRR11881623 | Hvu-0.6-2_GP_sRNA-seq | 0.6 mm anther | Anther | Golden Promise | Hvu-0.6-2_GP_sRNA-seq | USA: St. Louis | replicate 2 |
| SRR11881624 | Hvu-0.6-1_GP_sRNA-seq | 0.6 mm anther | Anther | Golden Promise | Hvu-0.6-1_GP_sRNA-seq | USA: St. Louis | replicate 1 |
| SRR11881625 | Hvu-0.4-3_GP_sRNA-seq | 0.4 mm anther | Anther | Golden Promise | Hvu-0.4-3_GP_sRNA-seq | USA: St. Louis | replicate 3 |
| SRR11881626 | Hvu-0.4-2_GP_sRNA-seq | 0.4 mm anther | Anther | Golden Promise | Hvu-0.4-2_GP_sRNA-seq | USA: St. Louis | replicate 2 |
| SRR11881627 | Hvu-0.4-1_GP_sRNA-seq | 0.4 mm anther | Anther | Golden Promise | Hvu-0.4-1_GP_sRNA-seq | USA: St. Louis | replicate 1 |
| SRR11881628 | Hvu-0.2-3_GP_sRNA-seq | 0.2 mm anther | Anther | Golden Promise | Hvu-0.2-3_GP_sRNA-seq | USA: St. Louis | replicate 3 |
| SRR11881629 | Hvu-0.2-2_GP_sRNA-seq | 0.2 mm anther | Anther | Golden Promise | Hvu-0.2-2_GP_sRNA-seq | USA: St. Louis | replicate 2 |
| SRR11881630 | Hvu-0.2-1_GP_sRNA-seq | 0.2 mm anther | Anther | Golden Promise | Hvu-0.2-1_GP_sRNA-seq | USA: St. Louis | replicate 1 |
| SRR11881631 | Hvu-1.8-3_M_sRNA-seq | 1.8 mm anther | Anther | Morex | Hvu-1.8-3_M_sRNA-seq | USA: St. Louis | replicate 3 |
| SRR11881632 | Hvu-0.2-3_M_sRNA-seq | 0.2 mm anther | Anther | Morex | Hvu-0.2-3_M_sRNA-seq | USA: St. Louis | replicate 3 |
| SRR11881633 | Hvu-1.8-2_M_sRNA-seq | 1.8 mm anther | Anther | Morex | Hvu-1.8-2_M_sRNA-seq | USA: St. Louis | replicate 2 |
| SRR11881634 | Hvu-1.8-1_M_sRNA-seq | 1.8 mm anther | Anther | Morex | Hvu-1.8-1_M_sRNA-seq | USA: St. Louis | replicate 1 |
| SRR11881635 | Hvu-1.4-4_M_sRNA-seq | 1.4 mm anther | Anther | Morex | Hvu-1.4-4_M_sRNA-seq | USA: St. Louis | replicate 3 |
| SRR11881636 | Hvu-1.4-3_M_sRNA-seq | 1.4 mm anther | Anther | Morex | Hvu-1.4-3_M_sRNA-seq | USA: St. Louis | replicate 2 |
| SRR11881637 | Hvu-1.4-1_M_sRNA-seq | 1.4 mm anther | Anther | Morex | Hvu-1.4-1_M_sRNA-seq | USA: St. Louis | replicate 1 |
| SRR11881638 | Hvu-1.0-3_M_sRNA-seq | 1.0 mm anther | Anther | Morex | Hvu-1.0-3_M_sRNA-seq | USA: St. Louis | replicate 3 |
| SRR11881639 | Hvu-1.0-2_M_sRNA-seq | 1.0 mm anther | Anther | Morex | Hvu-1.0-2_M_sRNA-seq | USA: St. Louis | replicate 2 |
| SRR11881537 | Tae-1.8-3_F_sRNA-seq | 1.8 mm anther | Anther | Fielder | Tae-1.8-3_F_sRNA-seq | USA: St. Louis | biological replicate 3 |
| SRR11881538 | Tae-1.8-2_F_sRNA-seq | 1.8 mm anther | Anther | Fielder | Tae-1.8-2_F_sRNA-seq | USA: St. Louis | biological replicate 2 |
| SRR11881539 | Tae-1.8-1_F_sRNA-seq | 1.8 mm anther | Anther | Fielder | Tae-1.8-1_F_sRNA-seq | USA: St. Louis | biological replicate 1 |
| SRR11881540 | Tae-1.4-4_F_sRNA-seq | 1.4 mm anther | Anther | Fielder | Tae-1.4-4_F_sRNA-seq | USA: St. Louis | biological replicate 3 |
| SRR11881541 | Tae-1.4-3_F_sRNA-seq | 1.4 mm anther | Anther | Fielder | Tae-1.4-3_F_sRNA-seq | USA: St. Louis | biological replicate 2 |
| SRR11881542 | Tae-1.4-1_F_sRNA-seq | 1.0 mm anther | Anther | Fielder | Tae-1.4-1_F_sRNA-seq | USA: St. Louis | biological replicate 1 |
| SRR11881543 | Tae-1.0-3_F_sRNA-seq | 1.0 mm anther | Anther | Fielder | Tae-1.0-3_F_sRNA-seq | USA: St. Louis | biological replicate 3 |
| SRR11881544 | Tae-1.0-2_F_sRNA-seq | 1.0 mm anther | Anther | Fielder | Tae-1.0-2_F_sRNA-seq | USA: St. Louis | biological replicate 2 |
| SRR11881545 | Tae-1.0-1_F_sRNA-seq | 1.0 mm anther | Anther | Fielder | Tae-1.0-1_F_sRNA-seq | USA: St. Louis | biological replicate 1 |
| SRR11881546 | Tae-0.8-3_F_sRNA-seq | 0.8 mm anther | Anther | Fielder | Tae-0.8-3_F_sRNA-seq | USA: St. Louis | biological replicate 3 |
| SRR11881547 | Tae-0.8-2_F_sRNA-seq | 0.8 mm anther | Anther | Fielder | Tae-0.8-2_F_sRNA-seq | USA: St. Louis | biological replicate 2 |
| SRR11881548 | Tae-0.8-1_F_sRNA-seq | 0.8 mm anther | Anther | Fielder | Tae-0.8-1_F_sRNA-seq | USA: St. Louis | biological replicate 1 |
| SRR11881549 | Tae-0.6-3_F_sRNA-seq | 0.6 mm anther | Anther | Fielder | Tae-0.6-3_F_sRNA-seq | USA: St. Louis | biological replicate 3 |
| SRR11881550 | Tae-0.6-2_F_sRNA-seq | 0.6 mm anther | Anther | Fielder | Tae-0.6-2_F_sRNA-seq | USA: St. Louis | biological replicate 2 |
| SRR11881551 | Tae-0.6-1_F_sRNA-seq | 0.6 mm anther | Anther | Fielder | Tae-0.6-1_F_sRNA-seq | USA: St. Louis | biological replicate 1 |
| SRR11881553 | Tae-0.4-4_F_sRNA-seq | 0.4 mm anther | Anther | Fielder | Tae-0.4-4_F_sRNA-seq | USA: St. Louis | biological replicate 3 |
| SRR11881554 | Tae-0.4-2_F_sRNA-seq | 0.4 mm anther | Anther | Fielder | Tae-0.4-2_F_sRNA-seq | USA: St. Louis | biological replicate 2 |
| SRR11881555 | Tae-0.4-1_F_sRNA-seq | 0.4 mm anther | Anther | Fielder | Tae-0.4-1_F_sRNA-seq | USA: St. Louis | biological replicate 1 |
| SRR11881556 | Tae-0.2-3_F_sRNA-seq | 0.2 mm anther | Anther | Fielder | Tae-0.2-3_F_sRNA-seq | USA: St. Louis | biological replicate 3 |
| SRR11881557 | Tae-0.2-2_F_sRNA-seq | 0.2 mm anther | Anther | Fielder | Tae-0.2-2_F_sRNA-seq | USA: St. Louis | biological replicate 2 |
| SRR11881558 | Tae-0.2-1_F_sRNA-seq | 0.2 mm anther | Anther | Fielder | Tae-0.2-1_F_sRNA-seq | USA: St. Louis | biological replicate 1 |