TriticeaemiRDB: The Triticeae miRNA Database

Project ID	Title	Publication	Instrument	Description	Notes
PRJCA000426	Salinity stress responsive miRNAs in wild emmer wheat	Genome-Wide Identification and Characterization of Salinity Stress-Responsive miRNAs in Wild Emmer Wheat (Triticum turgidum ssp. dicoccoides).	Illumina	To obtain more information on miRNAs in wild emmer, we systematically investigated and characterized the salinity-responsive miRNAs in wild emmer using deep sequencing technology.	Salinity stress
PRJCA009147	Small RNA sequencing of wild emmer wheat in response to salt stress	Multi-omics reveals the key and specific miRNA-mRNA modules underlying salt tolerance in wild emmer wheat (Triticum dicoccoides L.)	Illumina	To explore the molecular mechanism of genes related to salt stress in wild emmer, we systematically investigated and characterized the salinity-responsive miRNA in two wild emmer genotype (A5: resistant;C2: susceptible) using small RNA sequencing technology. 48 samples contain four time points (0.5h, 3h, 8h and 27h).	Salt stress
PRJCA009149	Degradome sequencing of wild emmer wheat in response to salt stress	Multi-omics reveals the key and specific miRNA-mRNA modules underlying salt tolerance in wild emmer wheat (Triticum dicoccoides L.)	Illumina	To identify the target genes of salt-responsived miRNA in wild emmer A5 and C2 genotype, we performed degradome sequencing of two pooled libraries of A5 and C2 genotype, respectively.	Salt stress

Run	Library Selection	Sample Name	Experiment Accession	Geographic Location Name
CRR019166	RT-PCR	small-RNA-seq of wild emmer wheat	CRX017600	China: Shaanxi
CRR019167	RT-PCR	small-RNA-seq of wild emmer wheat	CRX017600	China: Shaanxi
CRR019168	RT-PCR	small-RNA-seq of wild emmer wheat	CRX017600	China: Shaanxi
CRR019168	RT-PCR	small-RNA-seq of wild emmer wheat	CRX017600	China: Shaanxi

Run	Library Selection	Sample Name	Experiment Accession	Geographic Location Name
CRR464303	RT-PCR	C2_3h_control_replicate3	CRX405485	China: Shaanxi
CRR464274	RT-PCR	A5_30min_salt_replicate1	CRX405456	China: Shaanxi
CRR464298	RT-PCR	C2_30min_salt_replicate1	CRX405480	China: Shaanxi
CRR464278	RT-PCR	A5_3h_control_replicate2	CRX405460	China: Shaanxi
CRR464308	RT-PCR	C2_8h_control_replicate2	CRX405490	China: Shaanxi
CRR464301	RT-PCR	C2_3h_control_replicate1	CRX405483	China: Shaanxi
CRR464300	RT-PCR	C2_30min_salt_replicate3	CRX405482	China: Shaanxi
CRR464313	RT-PCR	C2_27h_control_replicate1	CRX405495	China: Shaanxi
CRR464271	RT-PCR	A5_30min_control_replicate1	CRX405453	China: Shaanxi
CRR464295	RT-PCR	C2_30min_control_replicate1	CRX405477	China: Shaanxi
CRR464279	RT-PCR	A5_3h_control_replicate3	CRX405461	China: Shaanxi
CRR464306	RT-PCR	C2_3h_salt_replicate3	CRX405488	China: Shaanxi
CRR464297	RT-PCR	C2_30min_control_replicate3	CRX405479	China: Shaanxi
CRR464277	RT-PCR	A5_3h_control_replicate1	CRX405459	China: Shaanxi
CRR464307	RT-PCR	C2_8h_control_replicate1	CRX405489	China: Shaanxi
CRR464296	RT-PCR	C2_30min_control_replicate2	CRX405478	China: Shaanxi
CRR464304	RT-PCR	C2_3h_salt_replicate1	CRX405486	China: Shaanxi
CRR464315	RT-PCR	C2_27h_control_replicate3	CRX405497	China: Shaanxi
CRR464280	RT-PCR	A5_3h_salt_replicate1	CRX405462	China: Shaanxi
CRR464283	RT-PCR	A5_8h_control_replicate1	CRX405465	China: Shaanxi
CRR464273	RT-PCR	A5_30min_control_replicate3	CRX405455	China: Shaanxi
CRR464299	RT-PCR	C2_30min_salt_replicate2	CRX405481	China: Shaanxi
CRR464318	RT-PCR	C2_27h_salt_replicate3	CRX405500	China: Shaanxi
CRR464275	RT-PCR	A5_30min_salt_replicate2	CRX405457	China: Shaanxi
CRR464293	RT-PCR	A5_27h_salt_replicate2	CRX405475	China: Shaanxi
CRR464276	RT-PCR	A5_30min_salt_replicate3	CRX405458	China: Shaanxi
CRR464302	RT-PCR	C2_3h_control_replicate2	CRX405484	China: Shaanxi
CRR464316	RT-PCR	C2_27h_salt_replicate1	CRX405498	China: Shaanxi
CRR464289	RT-PCR	A5_27h_control_replicate1	CRX405471	China: Shaanxi
CRR464290	RT-PCR	A5_27h_control_replicate2	CRX405472	China: Shaanxi
CRR464291	RT-PCR	A5_27h_control_replicate3	CRX405473	China: Shaanxi
CRR464305	RT-PCR	C2_3h_salt_replicate2	CRX405487	China: Shaanxi
CRR464272	RT-PCR	A5_30min_control_replicate2	CRX405454	China: Shaanxi
CRR464281	RT-PCR	A5_3h_salt_replicate2	CRX405463	China: Shaanxi
CRR464284	RT-PCR	A5_8h_control_replicate2	CRX405466	China: Shaanxi
CRR464285	RT-PCR	A5_8h_control_replicate3	CRX405467	China: Shaanxi
CRR464288	RT-PCR	A5_8h_salt_replicate3	CRX405470	China: Shaanxi
CRR464314	RT-PCR	C2_27h_control_replicate2	CRX405496	China: Shaanxi
CRR464282	RT-PCR	A5_3h_salt_replicate3	CRX405464	China: Shaanxi
CRR464286	RT-PCR	A5_8h_salt_replicate1	CRX405468	China: Shaanxi
CRR464287	RT-PCR	A5_8h_salt_replicate2	CRX405469	China: Shaanxi
CRR464309	RT-PCR	C2_8h_control_replicate3	CRX405491	China: Shaanxi
CRR464310	RT-PCR	C2_8h_salt_replicate1	CRX405492	China: Shaanxi
CRR464311	RT-PCR	C2_8h_salt_replicate2	CRX405493	China: Shaanxi
CRR464317	RT-PCR	C2_27h_salt_replicate2	CRX405499	China: Shaanxi
CRR464292	RT-PCR	A5_27h_salt_replicate1	CRX405474	China: Shaanxi
CRR464294	RT-PCR	A5_27h_salt_replicate3	CRX405476	China: Shaanxi
CRR464312	RT-PCR	C2_8h_salt_replicate3	CRX405494	China: Shaanxi

Run	Library Selection	Sample Name	Experiment Accession	Geographic Location Name
CRR464325	RT-PCR	A5dgd	CRX405507	China: Shaanxi
CRR464326	RT-PCR	C2dgd	CRX405508	China: Shaanxi

Triticum dicoccoides

BioProject Information

Sample Information

Triticum dicoccoides

BioProject Information

Stress and Treatment

Sample Information

PRJCA000426: Salinity stress responsive miRNAs in wild emmer wheat

PRJCA009147: Small RNA sequencing of wild emmer wheat in response to salt stress

PRJCA009149: Degradome sequencing of wild emmer wheat in response to salt stress